Pairwise Alignments

Query, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

Subject, 387 a.a., multidrug resistance efflux pump membrane fusion protein from Escherichia coli BL21

 Score = 93.6 bits (231), Expect = 6e-24
 Identities = 79/326 (24%), Positives = 145/326 (44%), Gaps = 60/326 (18%)

Query: 11  VVLTLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQKVEVRDNQTVK 70
           + + L +    A   W M +  M +  T D ++  +   I+  VSG +  V  +D   V+
Sbjct: 20  LAVVLFIAFSGAYAYWSMELEDMIS--TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVR 77

Query: 71  RGDVLFTIDQDRFTLALRQAKATLG------------ERQETLAQASREAQRNRKLGN-- 116
           +GD+L ++D+   T+AL +AK  L             ++Q +   AS   Q  + L +  
Sbjct: 78  QGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYN 137

Query: 117 ---------LVAAEQLEESQSREARARSAVS-------------------------EAQV 142
                    +++ E LE ++     +++A++                         EA  
Sbjct: 138 RRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAAD 197

Query: 143 AVDTAQLNLDRSVVRSPVDGYLNDRAPRNHEFVTAGRPVLSVVDSASYHVDGYFEETKLG 202
           A   A L L R+ ++SPV GY+  R+ +  E V+ G+ +++VV +    V+  F+ET+L 
Sbjct: 198 ATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLT 257

Query: 203 GIHIGDAVDI--RVMGDNTRLRGHVQSFAAGIEDRDRSSGANLLPNVNPAFSWVRLAQRI 260
            + IG +V+I   + G+N    G V     G       +  +LLP  N   +W+++ QR+
Sbjct: 258 DVRIGQSVNIISDLYGENVVFHGRVTGINMG-----TGNAFSLLPAQNATGNWIKIVQRV 312

Query: 261 PVRIAFDE---VPQDFRMIAGRTATV 283
           PV ++ D    +    R+    TAT+
Sbjct: 313 PVEVSLDPKELMEHPLRIGLSMTATI 338