Pairwise Alignments

Query, 339 a.a., ABC transporter, periplasmic binding protein from Pseudomonas putida KT2440

Subject, 320 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 67/315 (21%), Positives = 126/315 (40%), Gaps = 29/315 (9%)

Query: 1   MRKSISRLAASIGLGASLVVGSLAAPAVAQAEGKIRIAEQFGIVYLLLNVVRDQHLIEKH 60
           ++K+I++ A ++   A L  GS AA  V        I     + Y  + + + +  +++ 
Sbjct: 2   LKKNIAKTATALVAAALLWAGSAAAETV-------NIGFMPFVPYSAILLAKQKGWVDEE 54

Query: 61  GKEQGI-DIEVDWAQLSGGSAVNDALLSGSVDIAGAGVGPLLTVWDRTKGRQNVKAVASL 119
             + G+ D+E+ W Q +GG  VN+A  SG++DIA  G  P L  +      + V      
Sbjct: 55  FTKAGLKDVEIKWHQFAGGPPVNEAFASGALDIAALGDTPSLIAFANGIDTRFVGLACKG 114

Query: 120 GNFPYYLVSSNPNVKTIADISDKDRIAVPAVGVSVQSRFLQYAAAQQWGDKEYNR--LDK 177
                 +V  + +VKT+ D+  K    +    V      +   A  +  D E+    L  
Sbjct: 115 AKAEALIVLKDSSVKTVKDLKGKKVATLRGGNVHELLVLVLAEAGLKISDVEFLNLGLQD 174

Query: 178 YTLAVPHPDATAALLAGG--TELNGHFSNPPFQDQVLANKDVHVVLNSYDLLGPNSPTLL 235
             +A+   D  A L+     T+L+    +   +D      +++ ++              
Sbjct: 175 MGIALTKGDVDAVLVWEPLLTKLDSEGVSRTLRDGAGLKSNLNPIV-------------- 220

Query: 236 FATEKFRKDNPKTYKAFVDALAEAADFAQKDKAAAADTYIRVTKAKIDRDALIKLIDNPQ 295
            A   F   +P   KA++ A+   A+  + D A +A     V      +  L       +
Sbjct: 221 -ALGSFAAKHPDVLKAYLQAVKRGAEALRSDPAGSAQVLAPVVGLTPKQTEL--AFSRFE 277

Query: 296 YEFTVTPKNTYKLAD 310
           ++ TVT  +  +LAD
Sbjct: 278 WKPTVTEADQAELAD 292