Pairwise Alignments

Query, 648 a.a., GGDEF domain protein from Pseudomonas putida KT2440

Subject, 648 a.a., RNase E specificity factor CsrD from Dickeya dianthicola ME23

 Score =  124 bits (311), Expect = 1e-32
 Identities = 129/520 (24%), Positives = 227/520 (43%), Gaps = 22/520 (4%)

Query: 137 PMFAIAKLWQSALGSLGWLLLCGAASAVLGALLLRRQLRPLDYMVEQSHAIARRE----- 191
           P+F I +  +S L S+   +L  A     G   LRRQ+   + + +++  I   E     
Sbjct: 127 PLFGIPRYLKSTL-SIVLAILAIAVVVFHGVRWLRRQMAGQEQLEKRARRILAGERDTVM 185

Query: 192 FLSLPELPRTPELRRVVQAMNQMVEKLKALFTEQAERSERLRAESYQDSLTGLSNRRYFE 251
             S+ E P T        A++Q++  L      ++     +R+ + QD+ TGL+NR +FE
Sbjct: 186 HGSVHEWPATAS-----GALDQLLLDLTEAREARSRVDTLIRSFAAQDAQTGLNNRLFFE 240

Query: 252 MQLNNRVSNLEDARA-GYLLLLRVQGLAGLNARLG-GQRTDQLLQAVGEQLRRTCASYPE 309
            QL  ++ + ED    G ++++R+     L    G G   ++    +   L      YP 
Sbjct: 241 NQLATQLEDPEDVGTHGVVMMIRLPDFDTLQETHGYGGVLEEYRNTLINLLSTFVLRYPS 300

Query: 310 TNDLISRSRGGEFAVLAPGMVHEEAVHLAQALEATLQSLHETGASDIDPVACIGLAPFSP 369
              L++R    +F VL P    +EA  +A  L   +  L  T   D + +  IG++ +  
Sbjct: 301 A--LLARYYHSDFTVLLPHRTLKEADSIASQLVKAIDILPVTPLIDREDILHIGISVYHG 358

Query: 370 GDSPQALLKLADEALARAENQPTPGWVCLEQGVAAVAADSQHAWHERLDQAFINGHFELF 429
           G + + +++  ++A   A  Q   GW   ++ V      S   W   L+   + G   L+
Sbjct: 359 GQTTEQVMESVEDATRNAVLQGGNGWCVYDRWVPEKGRGSV-KWRTLLEHTLLRGGPRLY 417

Query: 430 FQPVIECASSQRVLHHKVISRLRDGQGEALPAGRFLPWLERFGWMPRLDVLVLEKVLA-H 488
            +P I    +  V H ++ SR+ DG  E L A  ++P + + G     D  ++ +V+A  
Sbjct: 418 QKPAI--TRNGEVHHREMFSRIYDGTQELLEA-EYMPLVRQLGLTSGYDRQLINRVIALT 474

Query: 489 LRGHDQVLALNLSAATLADPKALQRVFELLGQ-NAALGPRLVFEIGEEQLPEQ-AALEQL 546
           +   D VLA  ++  +L     L+ + E L Q       RL+FE+ E  + +    L  +
Sbjct: 475 VSWQDSVLAFPITVDSLLQRPFLRWLRETLLQCPKRQRERLLFELAEADVCQYIGRLRPI 534

Query: 547 TRRLHGLGFGLALQRFGGRFSMIGNLAHLGLAYLKIDGSYIRNIDHEQHKRLFIEAIQRA 606
              + GLG  LA+ + G      G +  L +  +K+    +R++D     +LF+ ++  A
Sbjct: 535 LAMITGLGCRLAVTQAGLTLVSTGYIKSLQVEVIKLHPGLVRSLDKRPENQLFVSSLTDA 594

Query: 607 AHSIDLPLIAERVETEGERLVLLEMGVGGIQGQLVGEPAP 646
                  + A  V T  E   LL+ GV G QG L     P
Sbjct: 595 CKGTHAQVFAAGVRTREEWQTLLDKGVCGGQGDLFAASEP 634