Pairwise Alignments

Query, 312 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

Subject, 456 a.a., ABC transporter, substrate binding protein from Agrobacterium fabrum C58

 Score =  104 bits (259), Expect = 5e-27
 Identities = 72/283 (25%), Positives = 131/283 (46%), Gaps = 10/283 (3%)

Query: 1   METRAHHVLIGLVTVLVVTGAMLFGLWLAKSSVDDAFKDYEVVFNEAVSGLSPGSTVQYN 60
           MET+A++ ++G+ T++V+  A  F  W+A+           V    + +GLS GS V++N
Sbjct: 1   METKANYTIVGIFTLIVIAAAFGFVYWMAEFGRGGPTAQLVVRIPGSANGLSVGSPVRFN 60

Query: 61  GIKVGDVSTLRLDPKDPRRVLARVRLSADTPVKEDTQAKLTLAGVTGNSFIQLSGGTPQS 120
           GI VG V  L +D  DP   +A   + AD PV   T+A L + G+TG ++I+LSGG    
Sbjct: 61  GIPVGTVRGLAIDRDDPAYSIAFTEVQADAPVFPSTRAVLEIQGLTGAAYIELSGGNKDG 120

Query: 121 PELKGKDGKLPVIIASPSPISRLLNDSSDLVTNINMLLHNAN------QMFSEDNIGHLS 174
             +  K  +  V    P+ ++  L+  ++L+   + +L  A+      Q F +D  G L+
Sbjct: 121 ERILQKSVESGV----PAELTADLSSVTNLLATADKILKRADGAIGELQGFVQDARGPLT 176

Query: 175 NTLANLDKTTGAFAGQHGSIAEAIAQLVQVGKQASATLAETQALMRNANGLLDSEGKQAI 234
            T+ N +K + A A     I   IA L  +     +        +     L+ +     I
Sbjct: 177 QTVRNAEKFSDALAANSDGIKNFIASLSSLSTTVQSVSVRLDGTLTAVENLVKAVDAGKI 236

Query: 235 GSAEQAMQSLAQSTATINNLLQNNSEAIGDGAQSLNQLAPAIR 277
            S    +  + +  A+ ++ +Q   E +   A++    +  ++
Sbjct: 237 DSILSNVDKVTKDVASASSDIQGIMETVQSTARNFEAASTEVQ 279



 Score = 35.0 bits (79), Expect = 3e-06
 Identities = 24/144 (16%), Positives = 64/144 (44%), Gaps = 14/144 (9%)

Query: 175 NTLANLDKTTGAFAGQHGSIAEAIAQLVQVGKQASATLAETQALMRNANGLLDSEGKQAI 234
           + +AN  +       +   I +A++   ++G++ +   +    ++   +G+L ++   ++
Sbjct: 313 DAVANFKRIADDVGARRADIDQAVSDFTEMGRKLNLASSRVDGILAKVDGMLGTDDANSL 372

Query: 235 GSAEQAMQSLAQSTATINNLLQNNSEAIGDGAQSLNQLAPA--------IRELRETLNAL 286
            +  +A ++L    A  +NL    +  IG  A +L + + +        I   R+T++ L
Sbjct: 373 FA--KARETLTSFKAVADNL----NARIGPIADNLTRFSSSGLKDFQALIGSTRQTVDNL 426

Query: 287 KGISRQLEADPSGYLLGRDNNKEF 310
                 ++ DP   + G +  K++
Sbjct: 427 NNAITNIDRDPQRLIFGGETVKQY 450