Pairwise Alignments

Query, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  279 bits (714), Expect = 1e-79
 Identities = 170/461 (36%), Positives = 254/461 (55%), Gaps = 28/461 (6%)

Query: 11  ILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLLQRQVFDLCFLDLRLGEDNGLDV 70
           IL+V+D+  +    R  L  +GY V   +SA  A   ++R   D    D  L   +G D+
Sbjct: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64

Query: 71  LAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVRQLS 130
           L  +  QAP ++V+++T +  ++ AV A++ GA  YL KP    +L+L   K L   ++ 
Sbjct: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124

Query: 131 ARLEALEGEIRKPKDGLDS---HSPAMMAVLETARQVAITDAN--------ILILGESGT 179
             L   + E    K GL +    SP M+ +  T RQV   +          +LI GE+GT
Sbjct: 125 RTLSFYQ-EREAQKSGLQALIGESPVMLTLKHTLRQVLDAERRMASDDLPPVLIEGETGT 183

Query: 180 GKGELARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQAD 239
           GK  +ARA+H    R++   +  NC S+ A L+E+ELFGH +GAFT A E  +G V  AD
Sbjct: 184 GKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERRVGLVEAAD 243

Query: 240 GGTLFLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESR 299
           GGTLFLDEIG+  L LQ KLL+ ++D+   R+G    R+ D+R+++ATN NLE+MV++ +
Sbjct: 244 GGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNLEQMVQQGK 303

Query: 300 FREDLLYRLNVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYR 359
           FR DL +RL +I L +P L  R +DIL+LA  FLA   + Y +P   FS EA + LL Y 
Sbjct: 304 FRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEAESLLLGYS 363

Query: 360 WPGNIRELRNVVERASIICPQERVEISHLG----MGEQPAGSAPRVG----------AAL 405
           WPGN+RELRN++E+  ++ P E V+   L     + ++P    P                
Sbjct: 364 WPGNVRELRNMLEQTVLLAPNEVVQAHQLNLCMTLVDEPLAQQPMAAMFEMPRHEPEPGT 423

Query: 406 SLDELERAHIGAVLAASD-TLDQAAKTLGIDASTL-YRKRK 444
           SL ++ER  +   L  +D  + ++A+ LG+    L YR  K
Sbjct: 424 SLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEK 464