Pairwise Alignments

Query, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

Subject, 925 a.a., DNA polymerase I from Pseudomonas simiae WCS417

 Score = 1400 bits (3624), Expect = 0.0
 Identities = 721/925 (77%), Positives = 800/925 (86%), Gaps = 10/925 (1%)

Query: 1   MSQAPLVLVDGSSYLYRAFHALPPLTTSKGMPTGAVKGVLNMLKSLRKQYPDSLFAVVFD 60
           MSQAPLVLVDGSSYLYRAFHALPPLTTSKG+PTGAVKGVLNMLKSLRKQYP+S FAVVFD
Sbjct: 1   MSQAPLVLVDGSSYLYRAFHALPPLTTSKGLPTGAVKGVLNMLKSLRKQYPNSPFAVVFD 60

Query: 61  AKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGTLAR 120
           AKGGTFRD M+AEYKANRPSMPDD+R+QIEPLH SV ALG+PLLCVEGVEADDVIGTLAR
Sbjct: 61  AKGGTFRDEMYAEYKANRPSMPDDMRLQIEPLHQSVIALGFPLLCVEGVEADDVIGTLAR 120

Query: 121 SSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFLALM 180
           SSAA  RPV+ISTGDKDMAQLVDGHITLVNTMTGS +D+ GV EKFGV PE IID+LALM
Sbjct: 121 SSAAADRPVVISTGDKDMAQLVDGHITLVNTMTGSAMDIEGVKEKFGVAPEQIIDYLALM 180

Query: 181 GDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEHRDA 240
           GD  DNIPGVPG+G KTA GLL G+ GG+ +LY  LD VP+L IRGAKTLPAKLEEHR+ 
Sbjct: 181 GDSSDNIPGVPGIGPKTASGLLVGVNGGIKELYEQLDIVPSLPIRGAKTLPAKLEEHREM 240

Query: 241 AFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKSWVAELQRDAAKAGDDV 300
           AFLSY+LATIK DVPLDV ++ L   EPDRE LL LYT +EFKSW  E+QRDA +     
Sbjct: 241 AFLSYQLATIKCDVPLDVGLDDLHLIEPDREKLLELYTLLEFKSWFDEIQRDAKRVELKA 300

Query: 301 APAVEPAVKV----EAKYETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQLVGLS 356
           APAVE  V+     EA Y TILDQA FD WL+KL +A LFAFDTETTG+DAQQAQLVG+S
Sbjct: 301 APAVEAVVETVAPTEASYTTILDQATFDIWLKKLNEATLFAFDTETTGIDAQQAQLVGVS 360

Query: 357 FAVEPHEAAYVPLAHDYEGAPVQLDREAVLLALKPLLEDPAKAKVGQNAKYDINILAN-- 414
           FAV+PHEAAY+PL H Y GAP QLDR+ VLLALKPLLEDP K KVGQ+AK+D+NILAN  
Sbjct: 361 FAVQPHEAAYIPLTHSYIGAPQQLDRDTVLLALKPLLEDPTKLKVGQHAKFDMNILANCA 420

Query: 415 --GSPA--IEMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQL 470
             G PA  I +RG+A+DTMLESYVLNSTATRHDMDSLA+KYLD+ T+AF+DIAGKGAKQL
Sbjct: 421 IGGDPAHGITVRGIAFDTMLESYVLNSTATRHDMDSLAKKYLDYDTVAFQDIAGKGAKQL 480

Query: 471 TFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVLARIERQG 530
           TF+QI L++AGPYAAEDADITLRLH  L A+L+  PS+  VL DIE+PLVPVLARIERQG
Sbjct: 481 TFDQIALEQAGPYAAEDADITLRLHQELFAQLSAIPSLASVLTDIEIPLVPVLARIERQG 540

Query: 531 ALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQLGTILYDKLGMPVLSKTAK 590
           ALVD +LL +QS ELG KM ELE +A+E+AGE FNLGSPKQLG ILY+KLG+PVL KT K
Sbjct: 541 ALVDKDLLGIQSIELGNKMVELERQAFEIAGEEFNLGSPKQLGAILYEKLGLPVLKKTGK 600

Query: 591 GQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQQAV 650
           GQ STAE VL +LA   YPLP+VLMQYRS+SKLKSTYTD+LP QINPRTGRIHTSY QAV
Sbjct: 601 GQASTAEEVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSYHQAV 660

Query: 651 AATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710
           AATGRLSSSDPNLQNIP+RTAEGRRIRQAF+A  GYKLLAADYSQIELRIMAHL+KDEGL
Sbjct: 661 AATGRLSSSDPNLQNIPVRTAEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGL 720

Query: 711 LHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770
           ++AFR++LDVH ATAAEVF V L DVT+DQRRSAKAINFGLIYGM A  L K IGVD K 
Sbjct: 721 MNAFRDNLDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKT 780

Query: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830
           ++ YID YFARYPGV  YMERTRAQAA+QG+VET FGRRLYLPDIN+  P  R  AERTA
Sbjct: 781 AKAYIDVYFARYPGVREYMERTRAQAADQGYVETFFGRRLYLPDINSNKPQERAAAERTA 840

Query: 831 INAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQH 890
           INAPMQGTAADIIK+AMV+VDNWL+ESGLDA+VILQVHDELV+EVREDLV QV ++IR+H
Sbjct: 841 INAPMQGTAADIIKKAMVRVDNWLTESGLDAKVILQVHDELVVEVREDLVAQVSEKIREH 900

Query: 891 MSQAAQLDVPLLVEAGVGANWDEAH 915
           MS AAQLDVPLLVE GVG NWDEAH
Sbjct: 901 MSAAAQLDVPLLVEVGVGNNWDEAH 925