Pairwise Alignments

Query, 915 a.a., DNA polymerase I, 5 from Pseudomonas putida KT2440

Subject, 998 a.a., DNA polymerase I from Agrobacterium fabrum C58

 Score =  738 bits (1906), Expect = 0.0
 Identities = 441/1008 (43%), Positives = 593/1008 (58%), Gaps = 114/1008 (11%)

Query: 6   LVLVDGSSYLYRAFHALPPLTT-SKGMPTGAVKGVLNMLKSLRKQYPDS-------LFAV 57
           L LVDGS +++RAFHA+PPL   S G+P  AV G  NML  L K   ++        FAV
Sbjct: 7   LFLVDGSGFIFRAFHAIPPLNRKSDGLPVNAVSGFCNMLWKLLKDARNTDVGVTPTHFAV 66

Query: 58  VFDAKGGTFRDAMFAEYKANRPSMPDDLRVQIEPLHASVKALGYPLLCVEGVEADDVIGT 117
           +FD    TFR+ ++  YKANR + P+DL  Q   +  + +A   P +  EG EADD+I T
Sbjct: 67  IFDYSSKTFRNELYDLYKANRSAPPEDLVPQFGLIREATRAFNLPCIETEGFEADDIIAT 126

Query: 118 LARSSAALGRPVIISTGDKDMAQLVDGHITLVNTMTGSVLDVAGVHEKFGVGPEHIIDFL 177
            AR + A+G  V I + DKD+ QLV  ++ + + M    + V  V EK+GVGPE +ID  
Sbjct: 127 YARQAEAIGADVTIISSDKDLMQLVTANVHMYDAMKDKQIGVPDVIEKWGVGPEKMIDLQ 186

Query: 178 ALMGDKVDNIPGVPGVGEKTAVGLLTGIGGGLSDLYANLDKVPALAIRGAKTLPAKLEEH 237
           A+ GD  DN+PG+PG+G KTA  LL        + Y +LD    L  R  +    K  E+
Sbjct: 187 AMTGDSTDNVPGIPGIGPKTAAQLL--------EEYGDLD---TLLARAGEIKQQKRREN 235

Query: 238 ----RDAAFLSYELATIKVDVPLDVEVEALVCGEPDREALLALYTEMEFKS--------- 284
                + A LS +L  ++ DVPL+  +E LV    +   L+A    MEF +         
Sbjct: 236 IIANAELARLSRQLVALRTDVPLEQSLEELVLEPQNGPKLIAFLKAMEFTTLTRRVAEAT 295

Query: 285 ---------------WVAE-----LQRDAAKAGDDV--------APAVEPAVKVEAK--- 313
                          W A+     L   AA    DV        A AV PA ++  +   
Sbjct: 296 DSDASAIDPANVPVQWGADAHGPDLDAPAAAMAGDVSAEGNNRPASAVAPAKRMIGEGST 355

Query: 314 ---------------------YETILDQARFDAWLEKLRQAPLFAFDTETTGLDAQQAQL 352
                                Y  I D A  D W+   R+A + AFDTETT LD  QA+L
Sbjct: 356 PADLTTARQALFAATKIDTTAYTAIRDIATLDLWIAAAREAGVVAFDTETTSLDPMQAEL 415

Query: 353 VGLSFAVEPH---------EAAYVPLAHDYEGAPVQLDREAVLLA------------LKP 391
           VG S A+  +          AAYVPL H   G+   L  + + LA            LK 
Sbjct: 416 VGFSLAIADNGKDASGTDIRAAYVPLTHK-TGSGGDLFSDGIKLAEGQAPFAEALERLKD 474

Query: 392 LLEDPAKAKVGQNAKYDINILANGSPAIEMRGVAYDTMLESYVLNSTATRHDMDSLAQKY 451
           LLED A  KV QN KYD  ++      + MR    DTML SYVL +  T H MD+L++++
Sbjct: 475 LLEDEAVLKVAQNLKYDYLLMKRHG--VVMRSFD-DTMLISYVLEAGKTTHGMDTLSERW 531

Query: 452 LDHTTIAFEDIAGKGAKQLTFNQINLDKAGPYAAEDADITLRLHHALQARLAQTPSVQPV 511
           L HT IA++D+ G G   +TF+ +N+DKA  YAAEDAD+TLRL  AL+ RL  +  +  V
Sbjct: 532 LGHTPIAYKDVTGSGKSSITFDFVNIDKATAYAAEDADVTLRLWMALKPRLV-SERLTKV 590

Query: 512 LMDIEMPLVPVLARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETFNLGSPKQ 571
              +E PLVPVLA +E +G  VD ++L   SGEL  K A  E   YELAGE FN+GSPKQ
Sbjct: 591 YERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEIYELAGERFNIGSPKQ 650

Query: 572 LGTILYDKLGMPVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKL 631
           LG IL+ ++G+P  SKT  GQ ST+  VL++LA +G  LP  ++ +R L+KLKSTYTD L
Sbjct: 651 LGDILFGRMGLPGGSKTKTGQWSTSAQVLEDLAAEGAELPRKIVDWRQLTKLKSTYTDAL 710

Query: 632 PGQINPRTGRIHTSYQQAVAATGRLSSSDPNLQNIPIRTAEGRRIRQAFIASPGYKLLAA 691
           P  I+P T R+HTSY  A   TGRLSSS+PNLQNIP+RTAEGR+IR AFI++PG+KLL+A
Sbjct: 711 PSYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRTAEGRKIRTAFISTPGHKLLSA 770

Query: 692 DYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVTTDQRRSAKAINFGL 751
           DYSQIELR++AH+A    L +AF N +D+H  TA+E+FGV +E + ++ RR AKAINFG+
Sbjct: 771 DYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGI 830

Query: 752 IYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLY 811
           IYG+SAFGLA Q+ + R ++ DYI +YF R+PG+  YME T+A A E G+VET+FGRR +
Sbjct: 831 IYGISAFGLANQLSIARSEAGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAH 890

Query: 812 LPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSESGLDARVILQVHDEL 871
            P+I + NP+++   ER AINAP+QG+AADII+RAM++++  L    L AR++LQVHDEL
Sbjct: 891 YPEIRSSNPSVKAFNERAAINAPIQGSAADIIRRAMIRIEPALEAEKLSARMLLQVHDEL 950

Query: 872 VLEVREDLVQQVKDEIRQHMSQAA----QLDVPLLVEAGVGANWDEAH 915
           + EV E  +++    +   M  AA     + VPL V+A    NWDEAH
Sbjct: 951 IFEVEEAEIEKTLPVVVSVMEDAAMPAISMRVPLKVDARAADNWDEAH 998