Pairwise Alignments

Query, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

Subject, 314 a.a., glycine/betaine ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  226 bits (576), Expect = 5e-64
 Identities = 123/291 (42%), Positives = 179/291 (61%), Gaps = 6/291 (2%)

Query: 7   AVFALALSATTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLESLGYQVKIDSLAVP 66
           A+ A A+ +T   AAD+ A C  V+M    W+D+ +T+A+ ++LL+ LGY+ K  S +  
Sbjct: 11  ALSASAILSTNVLAADA-ASCQNVRMGVVNWTDVIATSAMTQVLLDGLGYKTKQTSASQQ 69

Query: 67  IIYGGLKDGQVDAFLGNWMPAQQGFHDKFIANGDVQQLSR-NLEGTEFTLAVPDYVWNAG 125
           II+ G++D ++D FLG W P        F+    V+ L + +LE    TLAVP Y+ + G
Sbjct: 70  IIFAGIRDQRLDLFLGYWNPLMTQTITPFVDAKQVKVLDKPSLEDARATLAVPTYLADKG 129

Query: 126 VKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQAMLAQVD 185
           +K FAD+ K   +   K+YGI  G+ AN  +KA+I KN+F LG+++LVESSE  MLA VD
Sbjct: 130 LKTFADIAKFEKELGGKIYGIEPGSGANTQIKAMIAKNQFGLGKFQLVESSEAGMLAAVD 189

Query: 186 RAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFG---SKGEVYTLTRKGYPQACPNAA 242
           RAV++++ + F GW PHPMNV + M YLTG +   G       V+++T   Y + CPN  
Sbjct: 190 RAVRRKEAVVFFGWAPHPMNVNVAMTYLTGSDDALGPNEGMATVWSVTAPNYAEQCPNVH 249

Query: 243 KLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGWLAGVTT 293
           KLL NL FT   E+ +M  ++D K +  E+AK W+K HP+    WL GVTT
Sbjct: 250 KLLTNLTFTAADESRMMQPLLDHKDAI-ESAKQWLKDHPQDQARWLEGVTT 299