Pairwise Alignments

Query, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

Subject, 314 a.a., Carnitine uptake ABC transporter, periplasmic component from Pseudomonas putida KT2440

 Score =  227 bits (579), Expect = 2e-64
 Identities = 121/293 (41%), Positives = 181/293 (61%), Gaps = 7/293 (2%)

Query: 7   AVFALALSATTAHA--ADSDAQCSTVKMADPGWSDIASTNAVARLLLESLGYQVKIDSLA 64
           ++  LALS+  A    A   A C  V++    W+D+ +T+A+A++LL+ LGYQ K  S +
Sbjct: 8   SLLPLALSSIVATPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLLDGLGYQTKQTSAS 67

Query: 65  VPIIYGGLKDGQVDAFLGNWMPAQQGFHDKFIANGDVQQLSR-NLEGTEFTLAVPDYVWN 123
             II+ G++D ++D FLG W P        F+     + L + +LE    TLAVP Y+++
Sbjct: 68  QQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQFKVLDKPSLEDARATLAVPKYLYD 127

Query: 124 AGVKDFADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQAMLAQ 183
            G+K FAD+ K   +   K+YGI  G+ AN  +KA+I KN+F+LG+++LVESSE  MLA 
Sbjct: 128 KGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGKFQLVESSEAGMLAA 187

Query: 184 VDRAVKKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFG---SKGEVYTLTRKGYPQACPN 240
           VDRAV++++ + F GW PHPMNV + M YL   +   G    +  V+T+T   Y + CPN
Sbjct: 188 VDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPDYAERCPN 247

Query: 241 AAKLLGNLKFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGWLAGVTT 293
           A +LL NLKF+ + E+ +M  ++D K +  E+A+ W+K HPE    WL GVTT
Sbjct: 248 ALRLLANLKFSAEDESRMMQPLLDHKDAL-ESARQWLKDHPEDKARWLEGVTT 299