Pairwise Alignments

Query, 307 a.a., putative choline betaine-binding protein from Pseudomonas putida KT2440

Subject, 292 a.a., glycine-betaine ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 79.7 bits (195), Expect = 7e-20
 Identities = 68/279 (24%), Positives = 122/279 (43%), Gaps = 12/279 (4%)

Query: 10  ALALSATTAHAADSDAQCSTVKMADPGWSDIASTNAVARLLLESLGYQVKIDSLAV-PII 68
           A A+   T  +A ++ +  T+ +    W D+     + + +LE  GY VK+ S +   I 
Sbjct: 19  AAAMVGMTVFSAKAEEK--TITVGTMSWEDLTPITGITKKVLEDSGYTVKVVSFSEWGIA 76

Query: 69  YGGLKDGQVDAFLGNWMPAQQGFHDKFIANGDVQQLSRNLEGTEFTLAVPDYVWNAGVKD 128
           Y  L  G +           Q + DK      ++++S    G    +AVP YV    +  
Sbjct: 77  YAALSKGDIQLLASQTDYVAQDYWDK--NKRRLEKISPVSHGLYQAIAVPKYVT---IDS 131

Query: 129 FADLQKHAGQFDKKLYGIGSGAPANLSLKAIIDKNEFNLGQWKLVESSEQAMLAQVDRAV 188
              L  +A +F  K+ GI  G+   L   A     ++ L + +LVE S  AM A +  A+
Sbjct: 132 MDQLNDNADKFGGKIIGIEPGS--GLMRDAGKAAKDYGL-KLQLVEGSTAAMTAALKSAI 188

Query: 189 KKQQFITFLGWTPHPMNVKLKMHYLTGGEKWFGSKGEVYTLTRKGYPQACPNAAKLLGNL 248
            +++++    W P  M  +  + +L   +  F      Y + +KG+    P+A +++ ++
Sbjct: 189 DRKEWVAVTVWEPSWMMQRYDVKFLKDPKGVFPPPQSYYWIGQKGFSAEYPHAREVIASV 248

Query: 249 KFTLDMENSIMAEVVDKKISFDEAAKAWVKAHPERLDGW 287
              L    +I   V D K + D+A K W  +H + L  W
Sbjct: 249 YVPLADITAINGAVNDGK-TMDQAVKEWTDSHADLLKRW 286