Pairwise Alignments

Query, 1053 a.a., cation efflux system protein from Pseudomonas putida KT2440

Subject, 1031 a.a., CzcABC family efflux RND transporter, transmembrane protein from Variovorax sp. SCN45

 Score =  622 bits (1605), Expect = 0.0
 Identities = 369/1039 (35%), Positives = 576/1039 (55%), Gaps = 31/1039 (2%)

Query: 1    MFERIIRFAIEQRIVVMIAVLIMAGIGIYSYQKLPIDAVPDITNVQVQINTAAPGYSPLE 60
            M   II     +R +V    + +   G +S+ ++ ++A PD+ +V VQ+ T   G +  E
Sbjct: 1    MINLIITQFFRRRHLVWAMSIALVLFGAWSWTQMTVEAYPDLGDVTVQVTTQVNGLASEE 60

Query: 61   TEQRITFPVETAMAGLPGLQQTRSLSRSGLSQVTVIFKDGTDIFFARQLINERLQVAKEQ 120
             EQ+IT P+E A++  PGL   RS S  GLS +T+ FKDGTD +FARQ + ER  + +  
Sbjct: 61   IEQQITTPLERALSNTPGLASIRSSSTFGLSLITLTFKDGTDDYFARQRVTER--IGQVS 118

Query: 121  LPEGVEAVMGPVSTGLGEIFLWTVEAEDGAVKEDGTPYTPTDLRVIQDWIIKPQLRNVPG 180
            LP G +  + PV+   GEI+ +T+E++   + E         L  IQ WI+ P LR V G
Sbjct: 119  LPSGAQPGLDPVAGPAGEIYRYTLESDTKNLME---------LSEIQRWIVIPGLRQVAG 169

Query: 181  VAEINTIGGYAKQFLVAPDPKRLATYKLTLNDLVAALESNNANVGAGYIERNGEQLLIRA 240
            V  I   GG+ K+F +  DP  L  Y L L+D+V A+ +N+AN G G I R  +  ++R 
Sbjct: 170  VVNITNFGGFTKEFQLELDPAALQKYGLALSDVVTAINNNSANAGGGRIARGEQSYVVRG 229

Query: 241  PGQVGNIEDIANIVITSVDGAPIRISSVADVSIGKELRTGA-ATENGREVVLGTVFMLIG 299
             G + +++D+  +V++   G+P+ +  +  +  G + R G    +   + + G V ML  
Sbjct: 230  IGLITSLDDLGAVVVSQSGGSPVLVRDLGRLQFGHQERGGILGKDRNPDTIEGIVLMLKY 289

Query: 300  ENSRTVSQAVAAKLADINRTL-PKGVVAVTVYDRTNLVEKAIATVKKNLVEGAILVIAIL 358
            EN   V + V  K+ ++   L P GV  V   DR +LV+  +  V   ++EG  LV  +L
Sbjct: 290  ENPSRVLEGVHKKIDELQAQLAPMGVKIVPYIDRDDLVKLTVDKVTHTVLEGMALVCFVL 349

Query: 359  FLFLGNIRAALITAMVIPLSMLFTFTGMFNNKVSANLMSLGALDFGIIVDGAVVIVENAI 418
             LFLG+ R+A++ A+ IP+S++  F  M   ++ ANL SLGA+DFGIIVDGA+V++E  +
Sbjct: 350  ILFLGSPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFSLGAIDFGIIVDGAIVVMEAIL 409

Query: 419  RRLAHAQHKHGRMLTKTERFHEVFAAAREARRPLIFGQLIIMVVYLPIFALTGVEGKMFH 478
            RR     H      T TE    +         P+ F  LII+  Y P+FA    EGK+F 
Sbjct: 410  RRREEEPHA-----TLTEG--NILETVSHVSGPIFFATLIIITAYFPLFAFERAEGKLFK 462

Query: 479  PMAFTVVMALLGAMVLSVTFVPAAIAMFVTGKVKEEEGVVMRTARLRYEPVLQWVLGHRN 538
            PMAFTV  AL+GA++ ++T +P+   + +   +K      +      Y  VL  +L    
Sbjct: 463  PMAFTVGYALVGALLCAITLIPSLAYVALRKPMKPFVNKPLVWLTGAYRRVLGHLLRVPA 522

Query: 539  IAFSAAVALVVLSGLLASRMGSEFIPSLSEGDFAMQAMRVPGTSLTQSVEMQQRLEKAVI 598
            IA++ ++A +    +L +  G EF+P + EG   +Q     G SL ++ EM   L + V+
Sbjct: 523  IAYALSIAALAAVAILGATAGREFLPDIDEGALWLQVQLPSGLSLDKASEMTAEL-RHVL 581

Query: 599  AQVPEVERMFARSGTAEIASDPMPPNASDAYIMLKPQDQWPNPKKPRDELIAEVQKAAAG 658
             + PEV  +  + G  +  +DP  P+  +  + LKP  +WP     +   +  + +  + 
Sbjct: 582  LEYPEVSYVVTQLGRNDDGTDPWTPSHVEVPVGLKPYSEWPAGVN-KAAFVRTLNERFSK 640

Query: 659  VPGSNYELSQPIQLRFNELISGVRSDVAVKVFGDDMDVLNNTANKIAAALKAVPGSSEVK 718
            +PG +  +SQPI    N+ + G  S + ++++GDD+       N+I   L  V G++   
Sbjct: 641  MPGFDVGISQPIIDGVNDAVGGAHSPLVLRIYGDDLKESRRIGNEIVDLLHTVRGTASAS 700

Query: 719  VEQTSGLPVLTINIDREKAARYGLNIADVQNSIAIAVGGRQAGTLYEGDRRFDMVVRLPE 778
            + Q   +P + I +DRE AAR G+N  DV + +   +GG    T+Y GDR +++ V+LP+
Sbjct: 701  LFQEPPIPQVVIKLDREAAARLGVNANDVASLVQTGMGGAPVITVYSGDRTYNVTVKLPK 760

Query: 779  TVRTDVAGMSSLLIPVPANAAQGANQIGFIPLSQVANLDLQLGPNQISRENGKRLVIVSA 838
            + ++    + SLL+    N A GA     IPLSQVA++ LQ G + IS E   R + V  
Sbjct: 761  SAKSGTEAIGSLLL----NGAGGAK----IPLSQVASVKLQTGESTISHELNSRQITVRI 812

Query: 839  NVRGRDLGSFVEEATASLDKKVQIP-AGYWTTWGGQFEQLQSAAKRLQIVVPVALLLVMT 897
            + RGRDL S++ EA   + K V+   A +   W GQFE  Q A  RL + + + + ++  
Sbjct: 813  DNRGRDLASYLVEAQDRIAKDVKFDHAKFRLQWAGQFENQQRAQARLAVSLLIVVSIMAV 872

Query: 898  LLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAGVGFIALSGVAVLNGLVMI 957
            LLF  F  ++   L+   +P A  GG++A+ +    L+++  VGFIAL GV++ NG++M+
Sbjct: 873  LLFFQFGKIRHVALILGVVPMATLGGLIAVHVAGETLNVATAVGFIALFGVSIQNGIIMV 932

Query: 958  AFIRGLREEGRTLRQAVDEGALTRLRPVLMTALVASLGFIPMALATGTGAEVQRPLATVV 1017
            A  R +R EG  L  +V EGA  RLRPVLMTA VAS+G +P ALATG G +VQR LATVV
Sbjct: 933  ANFRRVRGEGLALEASVLEGATERLRPVLMTATVASIGMLPAALATGVGTDVQRGLATVV 992

Query: 1018 IGGILSSTALTLLVLPALY 1036
            +GG++ ST LTL +LP L+
Sbjct: 993  VGGLVVSTLLTLFILPTLF 1011



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 9/156 (5%)

Query: 892  LLLVMTLLFLMFNNLKDGMLVFTGIPFALTGGVVALWLRDIPLSISAGVGFIALSGVAVL 951
            + LV  +L L   + +  ++    IP +L    + +    +P ++ + +G I   G+ V 
Sbjct: 342  MALVCFVLILFLGSPRSAVVAAVAIPMSLVTVFIVMHFTRMPANLFS-LGAIDF-GIIVD 399

Query: 952  NGLVMIAFIRGLREEGRTLRQAVDEGALTRL-----RPVLMTALVASLGFIPMALATGTG 1006
              +V++  I   REE       + EG +         P+    L+    + P+       
Sbjct: 400  GAIVVMEAILRRREEEP--HATLTEGNILETVSHVSGPIFFATLIIITAYFPLFAFERAE 457

Query: 1007 AEVQRPLATVVIGGILSSTALTLLVLPALYHWAHRK 1042
             ++ +P+A  V   ++ +    + ++P+L + A RK
Sbjct: 458  GKLFKPMAFTVGYALVGALLCAITLIPSLAYVALRK 493