Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

 Score =  381 bits (979), Expect = e-110
 Identities = 222/552 (40%), Positives = 326/552 (59%), Gaps = 20/552 (3%)

Query: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVII 65
           +Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + VI+
Sbjct: 8   SYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVIL 63

Query: 66  HPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 125
           H D S+ V D+GRG+PVD+H EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 64  HADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 123

Query: 126 NALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIHF 183
           NALS  + + V+R G  ++ T+  G     + V+G      TGT ++F P  + F +  F
Sbjct: 124 NALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSPKF 183

Query: 184 SWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFH 243
           S   L   ++  + L  G+ +  +D+ +G++  + YE GLR+++E   ++   + ++ F 
Sbjct: 184 SISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVEWHYEDGLRSYLEDSVSDFERLPNEPFC 243

Query: 244 FNVQRDDGVGVEVALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYI 299
            ++   +   V+ AL W     DS  E+   + N IP   GGTH+ G R  L  ++  + 
Sbjct: 244 GSL-AGNKEAVDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFC 299

Query: 300 EQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYF 359
           E   L  +  V    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   F
Sbjct: 300 EYRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDAF 358

Query: 360 ADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 419
           + +L E+P    A+    I+ A  R    KA +   RK       LPGKLADC  +DP  
Sbjct: 359 SLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMR 415

Query: 420 SELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 479
           SEL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G  
Sbjct: 416 SELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGVD 475

Query: 480 IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKV 539
            G  +  + +LRY  I I+ DAD DG HI TLL   F +    LVE G++Y+A PPLY++
Sbjct: 476 PGAAD--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYRI 533

Query: 540 KRGKQEQYIKDD 551
             GK+  Y  D+
Sbjct: 534 DLGKEIYYALDE 545



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 725 LDWLMNETTK-RHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAA-DQIFNTL 782
           LD L+ E  + +  + R+KGLGEMNP QL ETTMDP  RR++++T+ D  AA  ++ + L
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGDDFAATSEMMDML 611

Query: 783 MGDAVEP-RRDFIES 796
           +     P R+ ++ES
Sbjct: 612 LAKKRAPDRKSWLES 626