Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 869 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Variovorax sp. SCN45

 Score =  868 bits (2243), Expect = 0.0
 Identities = 464/844 (54%), Positives = 580/844 (68%), Gaps = 45/844 (5%)

Query: 4   NQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITV 63
           + +Y   SI +L+GL+AVRKRPGMYIGDT DG+GLHH+VFEVVDNSIDEALAGHCDDI V
Sbjct: 28  DNSYGEGSITILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVVDNSIDEALAGHCDDIVV 87

Query: 64  IIHPDESISVRDNGRGIP----VDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHG 119
            IH D SISV DNGRGIP    +D   E   SAAE+ +T LHAGGKF+ NSYKVSGGLHG
Sbjct: 88  TIHSDNSISVTDNGRGIPTGVKMDDKHEPKRSAAEIALTELHAGGKFNQNSYKVSGGLHG 147

Query: 120 VGVSVVNALSEKLVLTVRRSGKIWEQTY------------VHGVPQAPMAVVGDSETTGT 167
           VGVS VNALS  L L VRR GKI E  +            V GV  +PM ++GD++  GT
Sbjct: 148 VGVSCVNALSVMLRLVVRREGKIHELEFSRGFVQNRLLETVSGVEVSPMKIIGDTDKRGT 207

Query: 168 HIHFKPSAETFK-NIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAF 226
            +HF P  + FK N  F ++IL+KR+RELSFLN+GV I LKDER+GKE+ F   GG+R F
Sbjct: 208 EVHFLPDTQIFKENNDFHYEILSKRLRELSFLNNGVRIRLKDERTGKEDDFSGAGGVRGF 267

Query: 227 VEYLNTNKTPVNSQVFHFNVQRDDG---------VGVEVALQWNDSFNENLLCFTNNIPQ 277
           VE++N  KT ++   F+   +R            +GVEVA+QWN  +NE +LCFTNNIPQ
Sbjct: 268 VEFINKGKTVLHPNSFYAEGERPADTYGGIPGTHIGVEVAMQWNSGYNEQVLCFTNNIPQ 327

Query: 278 RDGGTHLVGFRSSLTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQ 337
           RDGGTHL G R+++TR +N YIE+   AKK KV  TGDD REGL  ++SVKVP+PKFSSQ
Sbjct: 328 RDGGTHLTGLRAAMTRVINKYIEENEFAKKAKVEVTGDDMREGLCCVLSVKVPEPKFSSQ 387

Query: 338 TKDKLVSSEVKTAVEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRK 397
           TKDKLVSSEV+  VE  + K   D+L E PN+AK + GK+++AARAREAARKAREMTRRK
Sbjct: 388 TKDKLVSSEVRAPVEDIVGKLLTDYLQERPNDAKIICGKIVEAARAREAARKAREMTRRK 447

Query: 398 GALDIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEK 457
           G LD  GLPGKLADCQEKDPAL E+YLVEGDSAGGSAKQGR+R+ QAILPL+GKILNVEK
Sbjct: 448 GVLDGMGLPGKLADCQEKDPALCEVYLVEGDSAGGSAKQGRDRKFQAILPLRGKILNVEK 507

Query: 458 ARFDKMISSQEVGTLITALGCGIGR----------EEYNIDKLRYHNIIIMTDADVDGSH 507
           AR++K+++S E+ T+ITALG GIGR          +++N+ KLRYH IIIMTDADVDG+H
Sbjct: 508 ARYEKLLTSNEILTMITALGTGIGRAGATTAGGGADDFNVAKLRYHRIIIMTDADVDGAH 567

Query: 508 IRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDAS 567
           IRTLLLTFF+RQ+PELVERG+IYIAQPPLYKVK GK+EQY+KD  A++ ++ + AL+DA 
Sbjct: 568 IRTLLLTFFYRQMPELVERGHIYIAQPPLYKVKVGKEEQYLKDGPALDAFLLKVALKDAR 627

Query: 568 LHL-DESAPAVSGVQLEALVNEFRSVMKTLKRLSRLYPEELTEHFVYLPEVTLEQLGDHA 626
           +     S+  +SG  L  L  + +     + RL      E       + +     L    
Sbjct: 628 IETGGASSTTLSGDTLAELARKHQVAEAVIARLRNFMDAEALR---AIADGVALDLDTTP 684

Query: 627 VMQAWLAQFQARLNSSQKSGLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGS 686
             +A     QA+L     +G+    S   D   +  L  +    HG        +DF   
Sbjct: 685 AAEASAVALQAKLRELNTTGVPAEVSSEFDARTDKPLLRISRRHHGNIKSSVLTQDFVHG 744

Query: 687 NDYRTVVNIGAKLSSLLG-EGAYVQRGERRKA----IVEFKEGLDWLMNETTKRHTIQRY 741
            DY  +         LL  EGA V+RGE  +A    + +F++ + WL++E  +  + QRY
Sbjct: 745 ADYAALAEAANTFRGLLSPEGALVKRGEGERAKEEKVDDFRQAMKWLISEAERATSRQRY 804

Query: 742 KGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALSV 801
           KGLGEMNP+QLWETTMDPTVRR+L+V I+DAI AD++F  LMGD VEPRR+FIE NAL  
Sbjct: 805 KGLGEMNPEQLWETTMDPTVRRLLRVQIDDAIEADRVFTMLMGDEVEPRREFIEQNALRA 864

Query: 802 SNLD 805
           +N+D
Sbjct: 865 ANID 868