Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 838 a.a., DNA gyrase subunit B (EC 5.99.1.3) from Sphingobium sp. HT1-2

 Score =  825 bits (2132), Expect = 0.0
 Identities = 457/838 (54%), Positives = 574/838 (68%), Gaps = 56/838 (6%)

Query: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIH 66
           Y + SIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEV DN+IDEALAGHCD I + ++
Sbjct: 17  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNAIDEALAGHCDRIVITLN 76

Query: 67  PDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKF----DDNSYKVSGGLHGVGV 122
           PD S+SV DNGRGIP  +HKEEGVSAAEVIMT LHAGGKF    DDN+YKVSGGLHGVGV
Sbjct: 77  PDNSVSVEDNGRGIPTGIHKEEGVSAAEVIMTQLHAGGKFENTSDDNAYKVSGGLHGVGV 136

Query: 123 SVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSET--TGTHIHFKPSAE---- 176
           SVVNALSE L L + R GK     + +G   AP+ V+GD+     GT + F  S E    
Sbjct: 137 SVVNALSEWLDLNIWRDGKEHWMRFAYGDATAPLKVIGDAPEGKKGTRVTFLASTEKVPG 196

Query: 177 ---TFKN-IHFSWDILAKRIRELSFLNSGVGILLKDER--SGKEEFFKYEGGLRAFVEYL 230
              TFKN   + +D L  R REL+FLNSGV + L D R    KE    YEGG+ AFV+YL
Sbjct: 197 DGGTFKNQTEYDFDKLEHRYRELAFLNSGVRLFLVDARHEEKKEVELYYEGGIAAFVKYL 256

Query: 231 NTNKTPVNSQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSS 290
           + NK  +          RDD V ++VAL+WNDS+ EN+LCFTNNIPQRDGGTHL  FR++
Sbjct: 257 DRNKNALMPDPIAIAGTRDD-VTIDVALEWNDSYYENVLCFTNNIPQRDGGTHLAAFRAA 315

Query: 291 LTRSLNSYIEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTA 350
           LTR+LNSY E+ GL KK KV+ TG+D REGLTAI+SVK+PDPKFSSQTKDKLVSSEV+  
Sbjct: 316 LTRTLNSYAEKTGLLKKEKVSLTGEDMREGLTAIVSVKLPDPKFSSQTKDKLVSSEVRQP 375

Query: 351 VEQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLA 410
           +E  M    A++L ENP   K +V K+IDAA AREAA++ARE+TRRKGA+DIA LPGKLA
Sbjct: 376 LESLMADKMAEWLEENPGHGKMIVQKVIDAAAAREAAKRARELTRRKGAMDIASLPGKLA 435

Query: 411 DCQEKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVG 470
           DCQE+DPA SEL+LVEGDSAGGSAKQGRNR  QAILPLKGKILNVE+ARFDKM+SS+EVG
Sbjct: 436 DCQERDPAKSELFLVEGDSAGGSAKQGRNRHNQAILPLKGKILNVERARFDKMLSSKEVG 495

Query: 471 TLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIY 530
           TLI A+G GI R+++N+DKLRYH I+IMTDADVDG+HIRTLLLTFF+RQ+P+++E G+++
Sbjct: 496 TLIQAMGTGI-RDDFNLDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPQIIEAGHLF 554

Query: 531 IAQPPLYKVKRGKQEQYIKDDEAMEEYMTQSALEDASLHLDESAPAVSGVQLEALVNEFR 590
           IAQPPLYK  RG+ E Y+KD+ A+E+Y+  + ++  ++ L+ +  A +G  L +L++  R
Sbjct: 555 IAQPPLYKASRGRSEVYLKDEAALEQYLVDNGVD--TMALETTGGARTGDDLRSLIDHAR 612

Query: 591 SVMKTLKRLSRLYPEELTEHF----VYLPEVTLEQLGDHAVMQ-AWLAQFQARLNSSQKS 645
            +   ++ + R Y   + E         PE++  QL +   M  AW+A            
Sbjct: 613 RMRAVMRYVPRRYDPAIIEALGLTGALDPELSEAQLAERLAMAVAWIASHDP--EGKWTG 670

Query: 646 GLAYNASLREDKERNVWLPEVEITSHGLASYITFNRDFFGSNDYRTVVNI---------- 695
            +A       ++   +W         G+  +      F GS + R +             
Sbjct: 671 RIAEGGGFHFER---LW--------RGVTDHHVIEHGFLGSAEARKLHGTASEEAESYAK 719

Query: 696 GAKLSSLLGEGAYVQRGERRKAIVEFK--------EGLDWLMNETTKRHTIQRYKGLGEM 747
           G++L S     A  + GE     V  K        E L+ +++   K  +IQRYKGLGEM
Sbjct: 720 GSRLVSAKAVAAQDELGEDELPAVSAKGVNISRPSELLEAILSAGRKGLSIQRYKGLGEM 779

Query: 748 NPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRDFIESNALSVSNLD 805
           N +QLWETT+DP  R ML+V +E A  AD+IF  LMGD VEPRR+FI+ NAL+V+NLD
Sbjct: 780 NAEQLWETTLDPDNRSMLRVEVEQADVADEIFTKLMGDVVEPRREFIQDNALNVANLD 837