Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 634 a.a., DNA topoisomerase IV subunit B from Pseudomonas putida KT2440

 Score =  379 bits (974), Expect = e-109
 Identities = 223/551 (40%), Positives = 322/551 (58%), Gaps = 20/551 (3%)

Query: 7   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVIIH 66
           Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + VI+H
Sbjct: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHARSVQVILH 64

Query: 67  PDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 126
            D S+ V D+GRG+PVD+H EEGVS  E+I+T LHAGGKF + +Y+ SGGLHGVG+SVVN
Sbjct: 65  ADHSLEVSDDGRGMPVDIHPEEGVSGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124

Query: 127 ALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGD--SETTGTHIHFKPSAETFKNIHFS 184
           ALS ++ + V+R G  ++ T+  G   + + VVG      TGT ++F P  + F +  FS
Sbjct: 125 ALSTQVRVRVKRDGNEYQMTFADGFKASELEVVGSVGKRNTGTSVYFSPDPKYFDSPKFS 184

Query: 185 WDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVFHF 244
              L   ++  + L  G+ +  +D+ SG++  + YE GLR+++         +  + F  
Sbjct: 185 ISRLKHVLKAKAVLCPGLLVSFEDKASGEKVEWHYEDGLRSYLVDSVNEFQRLPDEPFCG 244

Query: 245 NVQRDDGVGVEVALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE 300
           ++   +   V+ AL W     DS  E+   + N IP   GGTH+ G R  L  ++  + E
Sbjct: 245 SL-AGNKEAVDWALLWLPEGGDSIQES---YVNLIPTAQGGTHVNGLRQGLLDAMREFCE 300

Query: 301 QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFA 360
              L  +  V    +D  E +T ++S+K+ DP+FS QTK++L S E    V   +   F+
Sbjct: 301 FRNLLPRG-VKLAPEDVWERITFVLSMKMQDPQFSGQTKERLSSREAAAFVSGVVKDAFS 359

Query: 361 DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 420
            +L  +P     +    I  A  R    KA +   RK       LPGKLADC  +DP  +
Sbjct: 360 LWLNAHPELGMQLAELAISNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPMRA 416

Query: 421 ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 480
           EL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G   
Sbjct: 417 ELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGGEVLASQEVHNIAVAIGVDP 476

Query: 481 GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVK 540
           G  +  + +LRY  I I+ DAD DG HI TLL   F +    LVE G++Y+A PPLY++ 
Sbjct: 477 GATD--LAQLRYGKICILADADSDGLHIATLLCALFVQHFRTLVEAGHVYVAMPPLYRID 534

Query: 541 RGKQEQYIKDD 551
            GK+  Y  D+
Sbjct: 535 LGKEIYYALDE 545



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 725 LDWLMNETTK-RHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIEDAIAADQIFNTLM 783
           LD L+ E  + +  + R+KGLGEMNP QL ETTMDP  RR++++T++D  A  ++ + L+
Sbjct: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLDDVEATCELMDKLL 611