Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 630 a.a., Topoisomerase IV subunit B (EC 5.99.1.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  382 bits (981), Expect = e-110
 Identities = 227/553 (41%), Positives = 332/553 (60%), Gaps = 18/553 (3%)

Query: 5   QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVI 64
           QTY++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   + VI
Sbjct: 3   QTYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 65  IHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +H D+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118

Query: 125 VNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIH 182
           VNALS+++ +TVRR G+++   + +G     + VVG      TGT +HF P    F +  
Sbjct: 119 VNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDESFFDSPR 178

Query: 183 FSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFV-EYLNTNKT-PVNSQ 240
           FS   L   ++  + L  GV I  KDE +  E+ + Y+ GL  ++ E +N   T P    
Sbjct: 179 FSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDGLNDYLGEAVNGLPTLPEKPF 238

Query: 241 VFHFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTRSLNSYI 299
           + +FN + +    V+ AL W     E L   + N IP   GGTH+ G R  L  ++  + 
Sbjct: 239 IGNFNGETE---AVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFC 295

Query: 300 EQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYF 359
           E   +  +  V  + +D  +    ++SVK+ DP+F+ QTK++L S +    V   +   F
Sbjct: 296 EYRNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAF 354

Query: 360 ADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPAL 419
           + +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   
Sbjct: 355 SLWLNQNVQAAEQLAEMAIASAQRR--LRAAKKVVRKKLTSGPA-LPGKLADCTAQDLNR 411

Query: 420 SELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCG 479
           +EL+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  G
Sbjct: 412 TELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--G 469

Query: 480 IGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKV 539
           I  +  ++ +LRY  I I+ DAD DG HI TLL   F R    LV+ G++Y+A PPLY++
Sbjct: 470 IDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVRHFRALVKNGHVYVALPPLYRI 529

Query: 540 KRGKQEQYIKDDE 552
             GK+  Y   +E
Sbjct: 530 DLGKEVYYALTEE 542



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 8/89 (8%)

Query: 703 LGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVR 762
           LG+  Y    E  KA V     L+ L  +  K + +QR+KGLGEMNP QL ETT+DP  R
Sbjct: 531 LGKEVYYALTEEEKAGV-----LEQLKRKKGKPN-VQRFKGLGEMNPMQLRETTLDPNTR 584

Query: 763 RMLKVTIEDAIAADQIFNTLMGDAVEPRR 791
           R++++TI D    DQ  N +M   +  +R
Sbjct: 585 RLVQLTISD--EDDQRTNAMMDMLLAKKR 611