Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 630 a.a., DNA topoisomerase IV subunit B (NCBI) from Escherichia coli BW25113

 Score =  379 bits (973), Expect = e-109
 Identities = 224/559 (40%), Positives = 327/559 (58%), Gaps = 14/559 (2%)

Query: 5   QTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVI 64
           QTY++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   + VI
Sbjct: 3   QTYNADAIEVLTGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHAKRVDVI 58

Query: 65  IHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124
           +H D+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 59  LHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISV 118

Query: 125 VNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIH 182
           VNALS+++ + VRR G+++   + +G     + VVG      TGT +HF P    F +  
Sbjct: 119 VNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRNTGTSVHFWPDETFFDSPR 178

Query: 183 FSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVNSQVF 242
           FS   L   ++  + L  GV I  KDE +  E+ + Y+ GL  ++         +  + F
Sbjct: 179 FSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDGLNDYLAEAVNGLPTLPEKPF 238

Query: 243 HFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTRSLNSYIEQ 301
             N    D   V+ AL W     E L   + N IP   GGTH+ G R  L  ++  + E 
Sbjct: 239 IGNF-AGDTEAVDWALLWLPEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEY 297

Query: 302 EGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFAD 361
             +  +  V  + +D  +    ++SVK+ DP+F+ QTK++L S +    V   +   F  
Sbjct: 298 RNILPRG-VKLSAEDIWDRCAYVLSVKMQDPQFAGQTKERLSSRQCAAFVSGVVKDAFIL 356

Query: 362 FLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSE 421
           +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +E
Sbjct: 357 WLNQNVQAAELLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTAQDLNRTE 413

Query: 422 LYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGIG 481
           L+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  GI 
Sbjct: 414 LFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GID 471

Query: 482 REEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKR 541
            +  ++ +LRY  I I+ DAD DG HI TLL   F +    LV+ G++Y+A PPLY++  
Sbjct: 472 PDSDDLSQLRYGKICILADADSDGLHIATLLCALFVKHFRALVKHGHVYVALPPLYRIDL 531

Query: 542 GKQEQYIKDDEAMEEYMTQ 560
           GK+  Y   +E  E  + Q
Sbjct: 532 GKEVYYALTEEEKEGVLEQ 550



 Score = 55.8 bits (133), Expect = 7e-12
 Identities = 26/52 (50%), Positives = 37/52 (71%)

Query: 720 EFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVRRMLKVTIED 771
           E KEG+   +     +  +QR+KGLGEMNP QL ETT+DP  RR++++TI+D
Sbjct: 542 EEKEGVLEQLKRKKGKPNVQRFKGLGEMNPMQLRETTLDPNTRRLVQLTIDD 593