Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 631 a.a., DNA topoisomerase IV subunit B from Dickeya dianthicola ME23

 Score =  379 bits (974), Expect = e-109
 Identities = 226/552 (40%), Positives = 328/552 (59%), Gaps = 18/552 (3%)

Query: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDITVII 65
           +Y++ +I+VL GL+ VR+RPGMY   T      +H+  EV+DNS+DEALAGH   I VI+
Sbjct: 5   SYNADAIEVLSGLEPVRRRPGMYTDTTRP----NHLGQEVIDNSVDEALAGHARRIDVIL 60

Query: 66  HPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 125
           HPD+S+ V D+GRG+PVD+H EEGV A E+I+  LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 61  HPDQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSNKNYQFSGGLHGVGISVV 120

Query: 126 NALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVG--DSETTGTHIHFKPSAETFKNIHF 183
           NALS ++ +TVRR G++++  + +G     + V G      TGT +HF P    F +  F
Sbjct: 121 NALSTRVEVTVRRDGQVYDIAFENGDKVQDLTVTGTCGRRNTGTRVHFWPDVTFFDSPRF 180

Query: 184 SWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYL--NTNKTPVNSQV 241
           S   L   ++  + L  GV I+ KD  +  E+ + Y+GGL    +YL    N  P   + 
Sbjct: 181 SVLSLTHLLKAKAVLCPGVEIVFKDGVNDTEQRWCYQGGLS---DYLCEAVNGLPTLPEK 237

Query: 242 FHFNVQRDDGVGVEVALQWNDSFNENLL-CFTNNIPQRDGGTHLVGFRSSLTRSLNSYIE 300
               V   D   VE AL W     E L   + N IP   GGTH+ G R  L  ++  + E
Sbjct: 238 PFIGVIPGDTEAVEWALLWLPEGGELLTESYVNLIPTLQGGTHVNGLRQGLLDAMREFCE 297

Query: 301 QEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMNKYFA 360
              +  +  V  + +D  E    ++S+K+ DP+F+ QTK++L S +    V   +   F+
Sbjct: 298 FRNILPRG-VKLSAEDIWERCAYVLSLKMQDPQFAGQTKERLSSRQSAAFVSGVVKDAFS 356

Query: 361 DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALS 420
            +L +N   A+ +    I +A+ R   R A+++ R+K     A LPGKLADC  +D   +
Sbjct: 357 LWLNQNVQAAEQLAEMAISSAQRR--MRAAKKVVRKKLTSGPA-LPGKLADCTLQDLNKT 413

Query: 421 ELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGCGI 480
           EL+LVEGDSAGGSAKQ R+R  QAI+PLKGKILN  +   D++++SQEV  +  A+  GI
Sbjct: 414 ELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQEVHDISVAI--GI 471

Query: 481 GREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVK 540
             +  ++ +LRY  + I+ DAD DG HI TLL   F R    LV+ G++++A PPLY++ 
Sbjct: 472 DPDSDDLSQLRYGKVCILADADSDGLHIATLLCALFVRHFRALVQGGHVHVAMPPLYRID 531

Query: 541 RGKQEQYIKDDE 552
            GK+  Y  D+E
Sbjct: 532 LGKEVYYALDEE 543



 Score = 52.4 bits (124), Expect = 8e-11
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 6/69 (8%)

Query: 703 LGEGAYVQRGERRKAIVEFKEGLDWLMNETTKRHTIQRYKGLGEMNPDQLWETTMDPTVR 762
           LG+  Y    E  KA +     L+ L  +  K + +QR+KGLGEMNP QL ETT+DP  R
Sbjct: 532 LGKEVYYALDEEEKAGI-----LEQLKRKKGKPN-VQRFKGLGEMNPMQLRETTLDPNTR 585

Query: 763 RMLKVTIED 771
           R++++TI +
Sbjct: 586 RLVQLTINE 594