Pairwise Alignments

Query, 806 a.a., DNA gyrase subunit B from Pseudomonas putida KT2440

Subject, 634 a.a., Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  251 bits (641), Expect = 9e-71
 Identities = 180/571 (31%), Positives = 284/571 (49%), Gaps = 58/571 (10%)

Query: 3   ENQTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGS----GLHHMVFEVVDNSIDEALAGHC 58
           +N  Y   SI+ L   + +R RPGMYIG   DGS    G++ +V E++DNSIDE + GH 
Sbjct: 4   KNVQYTEDSIRSLDWKEHIRLRPGMYIGKLGDGSAQDDGIYVLVKEILDNSIDEHMMGHG 63

Query: 59  DDITVIIHPDESISVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLH 118
             I + I  +  + +RD GRGIP+    +         ++ ++ GGK+D  +++ S GL+
Sbjct: 64  RTIDIKIS-EHKVEIRDYGRGIPLGKVVD--------CVSKINTGGKYDSGAFQKSVGLN 114

Query: 119 GVGVSVVNALSEKLVLTVRRSGKIWEQTYVHGVPQAPMAVVGDSETTGTHIHFKPSAETF 178
           GVG   VNALS+   +   R G+     +  G       V   S+  GT I F P A  F
Sbjct: 115 GVGTKAVNALSQYFKVQSYRDGETKIAEFEKGELIEDRPVEKSSDRNGTKIVFSPDATVF 174

Query: 179 KNIHFSWDILAKRIRELSFLNSGVGILLKDERSGKEEFFKYEGGLRAFVEYLNTNKTPVN 238
           KN HF  + L  +I   +FLNSG+ I      +GK+ F   + GL   ++        V+
Sbjct: 175 KNYHFIPEYLENQIWNYAFLNSGLTINF----NGKKYFS--DKGLHDLLD------RKVD 222

Query: 239 SQVFHFNVQRDDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLVGFRSSLTRSLNSY 298
                + +    G  +E+AL   + + E    F N      GGTHL  FR ++ +++  +
Sbjct: 223 DDSKRYPIIHLKGNDIEMALTHTNQYGEEYHSFVNGQYTTQGGTHLAAFREAIVKAVREF 282

Query: 299 IEQEGLAKKNKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEV-------KTAV 351
            +++  A          D R+ + A I+V+V +P F SQTK KL S  V       +T V
Sbjct: 283 FKKDYDAA---------DIRQSIAAAIAVRVQEPVFESQTKTKLGSHSVGPDGPTLRTFV 333

Query: 352 EQEMNKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPG-KLA 410
              +     ++L +N   A A++ +++ + R R+     +++   +     A L   KL 
Sbjct: 334 NDFVKTELDNYLHKNQETANALLKRILQSERERKEISGIKKLANERAKK--ANLHNRKLR 391

Query: 411 DCQ---------EKDPALSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFD 461
           DC+         E+    + L++ EGDSA GS  + R+ +TQA+  L+GK LN       
Sbjct: 392 DCRVHYDDVKANEEKKNDTMLFITEGDSASGSITKSRDVQTQAVFSLRGKPLNCFGMTKK 451

Query: 462 KMISSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLP 521
            +  ++E   L  AL       E  +D LRY  I+I TDADVDG HIR L++T+F +  P
Sbjct: 452 VVYENEEFNLLQHALNI-----EDGVDGLRYRKIVIATDADVDGMHIRLLIMTYFLQFFP 506

Query: 522 ELVERGYIYIAQPPLYKVKRGKQEQYIKDDE 552
           ELV+ G++YI   PL++V+  K+  Y   ++
Sbjct: 507 ELVKNGHLYILDTPLFRVRNKKETIYCYSED 537