Pairwise Alignments

Query, 506 a.a., chromosomal replication initiator protein from Pseudomonas putida KT2440

Subject, 252 a.a., DnaA inactivator Hda (shorter homolog of DnaA) from Variovorax sp. SCN45

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 24/233 (10%)

Query: 176 TFDTFVEGKSNQLARAAAWQV--ADNPK-HGYNPLFLYGGVGLGKTHLMHAVGNHLLKKN 232
           +FD F  G +    R     V  A  P  H   P +L+G  G GKTHL+ +V   +  + 
Sbjct: 39  SFDAFFAGPNEAALRHLQVWVGGAGAPALHSPVPTYLWGEGGSGKTHLLESV--RVALRE 96

Query: 233 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFF-ARKERSQEEFFH 291
             A V +LH+               + E   F     A+L+DD+  + A ++ +   +F 
Sbjct: 97  QGASVGWLHA--------------GLLEPPEFDERWGAVLLDDVHLYTAVQQHAAFNWFV 142

Query: 292 TFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQ 351
               L  G    ++ +   P     L E L++R GWG    ++      R A+L + AD 
Sbjct: 143 NAQTLQRG----VVAAGALPPADLPLREDLRTRLGWGHVFHLQVLSESERRAVLRQAADA 198

Query: 352 AKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKD 404
             V L  D   ++  R   ++  L   L ++  ++    R ITI LIR  L++
Sbjct: 199 RGVMLSDDVLDYMLHRFSRDLGSLMELLSQLDGYALQTQRAITIPLIRSMLEN 251