Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 339 a.a., flagellar motor protein MotB from Pseudomonas simiae WCS417

 Score =  518 bits (1335), Expect = e-152
 Identities = 266/336 (79%), Positives = 292/336 (86%), Gaps = 8/336 (2%)

Query: 1   MENNQPIIVKRIKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60
           MENNQPII+KR+KRF  GHHGGAWKIAFADFATAMMAFFLVLWL+STATPEQKIAIAGYF
Sbjct: 1   MENNQPIIIKRVKRFAAGHHGGAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYF 60

Query: 61  KDPIGFSESGTPYIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQDKVESMAEQVERE 120
           KDPIGFSESGTP++IDLGGSPQLAPE+TINPE+K+E +P   + +++D VE+MAEQVE+E
Sbjct: 61  KDPIGFSESGTPFVIDLGGSPQLAPERTINPEIKTE-SPQEKIPIERDTVEAMAEQVEQE 119

Query: 121 RLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFE 180
           RLELLLQELQNKVEENPQL KFKDQI FEIT DGLRIQI DA NRPMFD GSARL+PYFE
Sbjct: 120 RLELLLQELQNKVEENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFE 179

Query: 181 DILLAMADTIKAVPNKISISGHTDAKPYAGTGDFGNWELSANRANAARRALVAGGYPDTQ 240
           DILLAMADTIKAVPNKISISGHTDAKPYAG GDFGNWELSANRANAARRALVAG YPD Q
Sbjct: 180 DILLAMADTIKAVPNKISISGHTDAKPYAGQGDFGNWELSANRANAARRALVAGSYPDPQ 239

Query: 241 VARVVGYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTIEGEQTQPAAPDAAQPGAAAP- 299
           VARVVG+ASS LFD ++P NP+NRRIDI+VLTKKAQR IEG+   P AP   Q GA AP 
Sbjct: 240 VARVVGFASSQLFDAKDPFNPINRRIDIVVLTKKAQRAIEGD--PPPAPQPTQ-GAGAPG 296

Query: 300 -VPAAPQAQAPAAEPEPMQPRELRQKLNIFEDGVLK 334
            VPA P A  P  EP P    ELRQKLN+F++G +K
Sbjct: 297 EVPADPNAIPPGQEPLP--AHELRQKLNLFDEGGVK 330