Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 346 a.a., Flagellar motor rotation protein MotB from Pseudomonas sp. S08-1

 Score =  501 bits (1289), Expect = e-146
 Identities = 248/348 (71%), Positives = 291/348 (83%), Gaps = 10/348 (2%)

Query: 1   MENNQPIIVKRIKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYF 60
           MENNQPI+VKR+K+   GHHGGAWKIAFADFATAMMAFFLV+WL+S+ATPEQK AI+GYF
Sbjct: 1   MENNQPILVKRVKKVAGGHHGGAWKIAFADFATAMMAFFLVMWLMSSATPEQKKAISGYF 60

Query: 61  KDPIGFSESGTPYIIDLGGSPQLAPEKTINPEVKSEP--------TPDTSLQLDQDKVES 112
           +DPIGF+ES +PY+IDLGG+P  AP++T+NPE+K  P          +   ++D  + E+
Sbjct: 61  QDPIGFTESASPYVIDLGGTPTPAPDRTLNPELKDAPDAADAAVDAKNDQAEMDASQAET 120

Query: 113 MAEQVERERLELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGS 172
           +AEQVERERLELLLQELQ KV+E+PQLQKFKDQILFEITQDGLRIQIMDAENRPMFD+GS
Sbjct: 121 LAEQVERERLELLLQELQTKVDEDPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDIGS 180

Query: 173 ARLQPYFEDILLAMADTIKAVPNKISISGHTDAKPYAGTGDFGNWELSANRANAARRALV 232
           ARLQPYFEDILL +A+TIKAVPNKIS+SGHTDAKP+AG  +FGNWELSANRANAARR LV
Sbjct: 181 ARLQPYFEDILLILAETIKAVPNKISVSGHTDAKPFAGQAEFGNWELSANRANAARRTLV 240

Query: 233 AGGYPDTQVARVVGYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTIEGEQTQPAAPDAA 292
           AGGYP+ +VARVVGYASS+LFDR++P NPVNRRIDIIVLTKKAQR IEGEQ    A ++A
Sbjct: 241 AGGYPEPRVARVVGYASSALFDRKDPFNPVNRRIDIIVLTKKAQRAIEGEQDGDGAAESA 300

Query: 293 QPGAAAPVPAAPQAQAPAAEPEPMQPRELRQKLNIFEDGVLKMDENKQ 340
           +P   AP  A      PAA  EP Q  ELRQ+LNIFEDG L+ D+ ++
Sbjct: 301 EP--PAPTEAVAPGSEPAAPGEPAQADELRQRLNIFEDGALQFDQPQE 346