Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 309 a.a., Flagellar motor rotation protein MotB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  227 bits (579), Expect = 3e-64
 Identities = 128/314 (40%), Positives = 194/314 (61%), Gaps = 18/314 (5%)

Query: 6   PIIV---KRIKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKD 62
           PI+V   +R K  G G HG +WKIA+ADF TAMMAFFLV+WL+S ++P++ I IA YF+ 
Sbjct: 7   PIVVVKRRRHKPHGGGAHG-SWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRT 65

Query: 63  PIGFSESGTPYIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQDKVESMAEQVERERL 122
           P+  + +G           ++A  ++  P    + T        Q  ++ + +++E+ RL
Sbjct: 66  PLATAVTG---------GNRIANSESPIPGGGDDYTQQQGEVEKQPNIDELKKRMEQSRL 116

Query: 123 ELLLQELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFEDI 182
             L  +L   +E +P+L+  +  +  ++ Q+GLRIQI+D++NRPMF  GSA ++PY  DI
Sbjct: 117 NKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFKTGSAEVEPYMRDI 176

Query: 183 LLAMADTIKAVPNKISISGHTDAKPYA-GTGDFGNWELSANRANAARRALVAGGYPDTQV 241
           L A+A  +  +PN+IS++GHTD  PYA G   + NWELSA+RANA+RR LVAGG  + +V
Sbjct: 177 LRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADRANASRRELVAGGLDNGKV 236

Query: 242 ARVVGYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTI--EGEQTQPAAPDAAQPGAAAP 299
            RVVG A++     + P + +NRRI ++VL K+A++ I  E  ++Q       Q  AAAP
Sbjct: 237 LRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILHENAESQNEPVSVLQQPAAAP 296

Query: 300 VPAAPQAQAPAAEP 313
             + P   +P AEP
Sbjct: 297 PASVP--TSPKAEP 308