Pairwise Alignments

Query, 340 a.a., flagellar motor protein MotB from Pseudomonas sp. SVBP6

Subject, 308 a.a., Motility protein B from Escherichia fergusonii Becca

 Score =  221 bits (563), Expect = 2e-62
 Identities = 124/310 (40%), Positives = 187/310 (60%), Gaps = 14/310 (4%)

Query: 7   IIVKRIKRFGDGHHGGAWKIAFADFATAMMAFFLVLWLLSTATPEQKIAIAGYFKDPIGF 66
           I+VKR K    G   G+WKIA+ADF TAMMAFFLV+WL+S ++P++ I IA YF+ P+  
Sbjct: 9   IVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVMWLISISSPKELIQIAEYFRTPLAT 68

Query: 67  SESGTPYIIDLGGSPQLAPEKTINPEVKSEPTPDTSLQLDQDKVESMAEQVERERLELLL 126
           + +G           +++  ++  P    + T        Q  +E + +++E+ RL  L 
Sbjct: 69  AVTG---------GDRISNSESPIPGGGDDYTQSQGEVNKQPNIEELKKRMEQSRLRKLR 119

Query: 127 QELQNKVEENPQLQKFKDQILFEITQDGLRIQIMDAENRPMFDLGSARLQPYFEDILLAM 186
            +L   +E +P+L+  +  +  ++ Q+GLRIQI+D++NRPMF  GSA ++PY  DIL A+
Sbjct: 120 GDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPMFRTGSADVEPYMRDILRAI 179

Query: 187 ADTIKAVPNKISISGHTDAKPYA-GTGDFGNWELSANRANAARRALVAGGYPDTQVARVV 245
           A  +  +PN+IS+SGHTD  PYA G   + NWELSA+RANA+RR L+ GG    +V RVV
Sbjct: 180 APVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRANASRRELMVGGLNGGKVLRVV 239

Query: 246 GYASSSLFDRQNPLNPVNRRIDIIVLTKKAQRTI--EGEQTQPAAPDAAQPGAAAPVPAA 303
           G A++     + P + VNRRI ++VL K A++ I  E  ++Q     A +    AP  + 
Sbjct: 240 GMAATMRLSDRGPDDAVNRRISLLVLNKHAEQAILHENAESQNEPVSALEKPEVAPQVSV 299

Query: 304 PQAQAPAAEP 313
           P    P+AEP
Sbjct: 300 P--TMPSAEP 307