Pairwise Alignments

Query, 312 a.a., Efflux ABC transporter, ATP-binding protein from Pseudomonas sp. S08-1

Subject, 578 a.a., putative ATP-binding component of a transport system (VIMSS) from Escherichia coli BW25113

 Score =  219 bits (557), Expect = 2e-61
 Identities = 102/220 (46%), Positives = 150/220 (68%)

Query: 5   DLVIRARGLSKRFGKLTAVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPSEGEV 64
           + VI A+ L+K+FG   A DH++ +V R E+FG LGPNG GKSTT +M+CGLL P+ G+ 
Sbjct: 327 ETVIEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQA 386

Query: 65  EVLGCQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLEFLASVQGIGRRETRQRIDELLE 124
            VLG  +   + + ++ +GYM QKFSLY +LTV++NL F + V G+  R   ++I  + E
Sbjct: 387 LVLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSE 446

Query: 125 RYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDSLFEL 184
            + L          +  G KQRLALA +++H+PD+L LDEPTS VDP +RREFW  +  +
Sbjct: 447 AFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSM 506

Query: 185 AEEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPREL 224
            E+G T++V+TH+MDEAE C R+G++  G+L+A G+P +L
Sbjct: 507 VEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDL 546



 Score =  181 bits (458), Expect = 5e-50
 Identities = 118/305 (38%), Positives = 162/305 (53%), Gaps = 12/305 (3%)

Query: 4   SDLVIRARGLSKRFGKLT--AVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPSE 61
           +D VI   GL KRF  +   AV  LD ++    V G +GP+G GK+T +RML GLL+P  
Sbjct: 2   NDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGAGKTTLMRMLAGLLKPDS 61

Query: 62  GEVEVLGCQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLEFLASVQGIGRRETRQRIDE 121
           G   V+G    ++   L   +GYM QKF LYEDLTV ENL   A ++ +     +Q    
Sbjct: 62  GSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLNLYADLRSVTGEARKQTFAR 121

Query: 122 LLERYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDSL 181
           LLE   L     +LAG +SGG KQ+L LA  ++ +P +LLLDEP   VDP SRRE W  +
Sbjct: 122 LLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVLLLDEPGVGVDPISRRELWQMV 181

Query: 182 FELAEEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPRELMDALPGHPLLIEC---A 238
            ELA EG  +L ST Y+DEAE+C  + +++ G L+  G P+ L   + G   L+      
Sbjct: 182 HELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQGEPKALTQTMAGRSFLMTSPHEG 241

Query: 239 QPRAAQRALHGHREVLASAQIGATLRVLCASENARDDIAATLRRAGVEAELRDGEA--NL 296
             +  QRAL    +V      G ++R++   E   DDI    R A    E+   E     
Sbjct: 242 NRKLLQRALK-LPQVSDGMIQGKSVRLILKKEATPDDI----RHADGMPEININETTPRF 296

Query: 297 EDVFV 301
           ED F+
Sbjct: 297 EDAFI 301