Pairwise Alignments

Query, 312 a.a., Efflux ABC transporter, ATP-binding protein from Pseudomonas sp. S08-1

Subject, 911 a.a., ribosome-associated ATPase/putative transporter RbbA from Escherichia coli ECOR38

 Score =  216 bits (551), Expect = 1e-60
 Identities = 105/225 (46%), Positives = 158/225 (70%), Gaps = 1/225 (0%)

Query: 3   DSDLVIRARGLSKRFGKLTAVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPSEG 62
           ++++ I AR L+ RFG   AVDH++  +PR E+FGFLG NGCGKSTT++ML GLL  SEG
Sbjct: 272 NAEIAIEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEG 331

Query: 63  EVEVLGCQIPRDAEELKRRIGYMTQKFSLYEDLTVQENLEFLASVQGIGRRETRQRIDEL 122
           E  + G  +     + +RR+GYM+Q FSLY +LTV++NLE  A +  I   E   R+ E+
Sbjct: 332 EAWLFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEM 391

Query: 123 LERYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDSLF 182
            ER+ L D    L  ++  G +QRL+LA AV+H+P++L+LDEPTS VDP +R  FW  + 
Sbjct: 392 SERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMV 451

Query: 183 ELA-EEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPRELMD 226
           +L+ ++  T+ +STH+M+EAERC R+ ++ AG+++A G+P+EL++
Sbjct: 452 DLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVE 496



 Score =  152 bits (385), Expect = 2e-41
 Identities = 87/224 (38%), Positives = 136/224 (60%), Gaps = 6/224 (2%)

Query: 7   VIRARGLSKRFGKLTAVDHLDLSVPRAEVFGFLGPNGCGKSTTIRMLCGLLQPSEGEVEV 66
           V +  G+S+ +GK  A++++ L +P   + G +GP+G GKS+ + ++ G     +G V V
Sbjct: 12  VAQLAGVSQHYGKTVALNNITLDIPARCMVGLIGPDGVGKSSLLSLISGARVIEQGNVIV 71

Query: 67  LGCQI--PRDAEELKRRIGYMTQKF--SLYEDLTVQENLEFLASVQGIGRRETRQRIDEL 122
           LG  +  P+   ++  RI +M Q    +LY  L+V EN++F A + G  + E   RI+EL
Sbjct: 72  LGGDMRDPKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGHDKAEREVRINEL 131

Query: 123 LERYWLTDRRKQLAGTMSGGQKQRLALAGAVLHKPDLLLLDEPTSAVDPQSRREFWDSLF 182
           L    L   R + AG +SGG KQ+L L  A++H P+LL+LDEPT+ VDP SR +FWD + 
Sbjct: 132 LTSTGLAPFRDRPAGKLSGGMKQKLGLCCALIHDPELLILDEPTTGVDPLSRAQFWDLID 191

Query: 183 EL--AEEGTTLLVSTHYMDEAERCTRLGILDAGRLVADGSPREL 224
            +   +   ++LV+T YM+EAER   L  ++AG ++A GS  EL
Sbjct: 192 SIRQRQSNMSVLVATAYMEEAERFDWLVAMNAGEVLATGSAEEL 235