Pairwise Alignments

Query, 359 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas sp. RS175

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas fluorescens SBW25

 Score = 99.4 bits (246), Expect = 2e-25
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 36/362 (9%)

Query: 8   YAGQLQDKVARLRDLLAPFDAPQPEVFDSPLQH----FRLRAEFRLWREAGERHYAM-FS 62
           +A QL  K   L + L+     +P+ + +PL      +R RA   +  +A  +H A+ F 
Sbjct: 107 HAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKHLAVGFR 166

Query: 63  QDDKRTPILIEQFPI---ASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMIT 119
               +  + I+  P+   A   I Q +P +         L H       +   +G ++  
Sbjct: 167 AVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQALGH-------VEVFSGTSIAV 219

Query: 120 LCYHR-PLDEHWHAAASKLASDLSVSIIGRSKGKREVIGHDYVVE-KLDVAGRTFSYRQP 177
           L  H  PL E       +  +     +    +G+ E +  D V+  +L+      +YR  
Sbjct: 220 LLRHMAPLSEADLHILKEFCTFHDAQLWLHGEGQPEPVDADAVLGFRLEQWDLELAYRP- 278

Query: 178 EGAFTQPNGTVNQKMLNWAYDALGDRTDD-LLELYCGNGNFTLPLATRVRKVLATEISKT 236
            G F Q N  VN  M+  A + L  + D+ +L+L+CG GNF LPLA +VR+V+A E  +T
Sbjct: 279 -GDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNFALPLARQVREVVAVEGVQT 337

Query: 237 SVNAALSNLSENAVDNVTLVRLS-AEELTEALNEVRPFRRLQGIDLKSYEFGSVFVDPPR 295
            V+ A  N   N + N    +   ++ LT+A             +     F +V +DPPR
Sbjct: 338 MVDRAAVNAVSNNLHNAQFFQADLSQPLTDA-------------EWAKQGFSAVLLDPPR 384

Query: 296 AGMDPDTCEL-TRRFENILYISCNPVTLAANIAQL-HDTHRIVRCALFDQFPWTHHMESG 353
            G      +L T + + ++Y+SCNP TLA +  +L    +R+ R  + D FP T H+E+ 
Sbjct: 385 DGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVEAM 444

Query: 354 VL 355
            L
Sbjct: 445 AL 446