Pairwise Alignments

Query, 359 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Pseudomonas sp. RS175

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 88/291 (30%), Positives = 136/291 (46%), Gaps = 22/291 (7%)

Query: 72  IEQFPIASLRINQLMPQLKAAWQASAPLSHKLFQVEFLTTLAGDAMITLCYHRPLDEHWH 131
           ++Q PI + ++  L+P+++A   +   + H L  VE +   +G  MI L +  PL     
Sbjct: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMI-LRHTAPLSSADR 216

Query: 132 AAASKLASDLSVSI-IGRSKGKREVIGHDYVVEKLDVAGRTFSYRQPEGAFTQPNGTVNQ 190
               + +    + + +       E +  +      +    TFS R     F Q N  VNQ
Sbjct: 217 EKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRD----FIQVNAGVNQ 272

Query: 191 KMLNWAYDALGDRTDD-LLELYCGNGNFTLPLATRVRKVLATEISKTSVNAALSNLSENA 249
           KM+  A + L  + +D +L+L+CG GNFTLPLAT+   V+  E     V     N   N 
Sbjct: 273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNG 332

Query: 250 VDNVTLVRLSAEELTEALNEVRPFRRLQGIDLKSYEFGSVFVDPPRAGMDPDTCELTRRF 309
           + NVT      E L E + + +P+ +          F  V +DP RAG      ++ +  
Sbjct: 333 LQNVTFYH---ENLEEDVTK-QPWAK--------NGFDKVLLDPARAGAAGVMQQIIKLE 380

Query: 310 E-NILYISCNPVTLAANI-AQLHDTHRIVRCALFDQFPWTHHMESGVLLTR 358
              I+Y+SCNP TLA +  A L   + I R A+ D FP T H+ES VL +R
Sbjct: 381 PIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431