Pairwise Alignments

Query, 168 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. RS175

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 94.4 bits (233), Expect = 1e-24
 Identities = 61/176 (34%), Positives = 98/176 (55%), Gaps = 11/176 (6%)

Query: 1   MSWPSDPHSADGQFESHSNELLRFLTRQVKCEELAADLRQET---WLRFRRRESGTEIGN 57
           MS P     +   F     ++L FL ++      AAD+ Q+    WL +R R    ++  
Sbjct: 1   MSRPKPDLLSADAFRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDR---AKVEQ 57

Query: 58  LRAFLYRIARNLIIDYRRQQKSRPV--EEQISIELVSA---QPGPERAASDAQRLERLQR 112
            RAFL+++ARNL+ D+ R+QK R     +Q  ++   A   Q  P  A    QRLE+L+ 
Sbjct: 58  PRAFLFQMARNLLRDHWRKQKVRHTVHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKE 117

Query: 113 VVEGLPPHLRQALLWNRLDGLTQREIGERLGVSESMAGRYILKALEHCQQQMDPQP 168
           V+  L P  R+AL+ +R +GL+Q +I ER+G+S SM  ++I  AL HC++++  +P
Sbjct: 118 VLAELSPRRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQHEP 173