Pairwise Alignments

Query, 521 a.a., Aerotaxis receptor from Pseudomonas sp. RS175

Subject, 511 a.a., PAS domain S-box from Enterobacter asburiae PDN3

 Score =  251 bits (641), Expect = 4e-71
 Identities = 179/534 (33%), Positives = 272/534 (50%), Gaps = 47/534 (8%)

Query: 1   MRNNQPVTQRERTFPAQQRLISTTNAKGVITYCNDAFVEISGFSKEELIGSPHNLVRHPD 60
           MR N PVTQ E        L+STT+ K  ITY N AF+E SG+ +E L+G PHNL+RHPD
Sbjct: 1   MRRNSPVTQNEYLLNDGSTLMSTTDTKSHITYANSAFIEASGYKEEHLLGEPHNLIRHPD 60

Query: 61  VPSAVFAHMWNTLKQGLPWMGIVKNRCKSGDHYWVNAYVTPIFEGNQVIGYESVRVKPTA 120
           +P+  F  MW TL+QG  W G+VKNR  +GDHYWV A VTP+++G  + GY SVR  P  
Sbjct: 61  MPAEAFGDMWFTLQQGETWTGLVKNRRHNGDHYWVRANVTPVWQGGSLTGYISVRNIPAR 120

Query: 121 EQVSRAEALYRRINQGKPAVPRSDKWLPILQDWLPFILVSQLSFIVGAFLNSSWGFALAA 180
           E+++ +E LY ++   +    R  K L + +    F+    L   +        G A  A
Sbjct: 121 EEIAASEKLYAKVRNNELKHYRFYKGLLVRRGLFSFM---SLFKCLSTSKRIHLGIATTA 177

Query: 181 LLS-VPLGLMGLQWQQRGIKRLLRLAEQTTSDPLIAQMYTDSRGVQARLEMSILSQEARL 239
           LLS + + L   +  Q G    L L   + +  L AQ+    + +  +++ S++S     
Sbjct: 178 LLSCLAVYLFPDKLVQSG---SLVLLFTSLAYYLHAQIARPVKSIVQQMQ-SVVSGRKTD 233

Query: 240 KTCLTRLQDTA---EHLNDQARQSNAL-----AHNSSSGLERQRV---------ETEQVA 282
                R+ D       +N      N+L     A  S  G   Q+V          +E+ A
Sbjct: 234 YYHFDRIDDIGLMMRLVNQSGLNLNSLVDDVGAQISGIGTISQQVAKEGAALQTRSEETA 293

Query: 283 TAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIERLSVVVGETGQTVT 342
             + Q A+  +E+AS V++TA+  +EA        ++A  TR++  R   ++ ET   + 
Sbjct: 294 DFLQQTASAVEEIASAVKQTAETAKEAT-------EMADRTRDSAHRGEAMMKETIGMMQ 346

Query: 343 QLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSE 402
            +++D+ +I  ++ VI  IA QTN+LALNAA+EAARAGE GRGFAVVA EVR LAQ ++ 
Sbjct: 347 SVSQDNSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHSAT 406

Query: 403 STGQIHALIAKLQQTANNAVQTMDAGHRQAEEGVARVMEADQALVGISEAVANITDMTTQ 462
           +  +I ALI K   + N               GV +V + +  L  + + V  ++ +  +
Sbjct: 407 AAKEIKALIEKNVASVN--------------AGVEKVEQTETQLTVMIDNVLRVSSLIKE 452

Query: 463 IAAATEEQSSVAEEISRNISNISELADQTSDQAHNSALLSEELT-RTANTQYSL 515
           I  AT+EQ+     I+ +IS I  +    +    N    +  LT RT   Q ++
Sbjct: 453 IGHATQEQTQALTLINASISRIGAMTHNNTGMVDNVTHAANHLTQRTTRLQQAI 506



 Score = 32.0 bits (71), Expect = 6e-05
 Identities = 37/200 (18%), Positives = 74/200 (37%), Gaps = 31/200 (15%)

Query: 333 VVGETGQTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADE 392
           +V ++G  +  L    D++G  +  I  I+ Q                + G      ++E
Sbjct: 249 LVNQSGLNLNSLV---DDVGAQISGIGTISQQV--------------AKEGAALQTRSEE 291

Query: 393 VRQLAQRTSESTGQIHALIAKLQQTANNAVQTMDAGHRQAEEGVARVMEADQALVGISEA 452
                Q+T+ +  +I + + +  +TA  A +  D     A  G A + E    +  +S+ 
Sbjct: 292 TADFLQQTASAVEEIASAVKQTAETAKEATEMADRTRDSAHRGEAMMKETIGMMQSVSQD 351

Query: 453 VANITDM----------TTQIAAATEEQSSVAEEISRNI----SNISELADQTSDQAHNS 498
            + I D+          T  +A     +++ A E  R      + +  LA  ++  A   
Sbjct: 352 NSQIVDIISVIDRIAFQTNILALNAAVEAARAGEAGRGFAVVAAEVRNLAQHSATAAKEI 411

Query: 499 ALLSEELTRTANTQYSLVER 518
             L E+   + N     VE+
Sbjct: 412 KALIEKNVASVNAGVEKVEQ 431



 Score = 28.9 bits (63), Expect = 5e-04
 Identities = 19/119 (15%), Positives = 56/119 (47%), Gaps = 4/119 (3%)

Query: 407 IHALIAKLQQTANNAVQTMDAGHRQAEEGVARVMEADQALVGISEAVANITDMTTQIAAA 466
           +HA IA+  ++    +Q++ +G +       R+ +    +  ++++  N+  +   + A 
Sbjct: 208 LHAQIARPVKSIVQQMQSVVSGRKTDYYHFDRIDDIGLMMRLVNQSGLNLNSLVDDVGAQ 267

Query: 467 TEEQSSVAEEISRNISNISELADQTSDQAHNSALLSEELT----RTANTQYSLVERFNR 521
                ++++++++  + +   +++T+D    +A   EE+     +TA T     E  +R
Sbjct: 268 ISGIGTISQQVAKEGAALQTRSEETADFLQQTASAVEEIASAVKQTAETAKEATEMADR 326