Pairwise Alignments

Query, 521 a.a., Aerotaxis receptor from Pseudomonas sp. RS175

Subject, 511 a.a., PAS domain-containing protein from Dickeya dadantii 3937

 Score =  246 bits (627), Expect = 2e-69
 Identities = 169/521 (32%), Positives = 260/521 (49%), Gaps = 34/521 (6%)

Query: 1   MRNNQPVTQRERTFPAQQRLISTTNAKGVITYCNDAFVEISGFSKEELIGSPHNLVRHPD 60
           MR N P+TQ+E        L+STT+ K  ITY N AF+ +SGF + EL+G+PHN+VRHPD
Sbjct: 1   MRVNAPITQQEYLLDDGTTLMSTTDVKSHITYANSAFIRVSGFDEHELMGTPHNIVRHPD 60

Query: 61  VPSAVFAHMWNTLKQGLPWMGIVKNRCKSGDHYWVNAYVTPIFEGNQVIGYESVRVKPTA 120
           +P   FA MW TL+QG  W G+VKNR K+GDHYWV A VTP++  NQ+ GY SVR  P A
Sbjct: 61  MPVEAFADMWYTLQQGDSWTGLVKNRRKNGDHYWVRANVTPVYHHNQLAGYISVRNTPKA 120

Query: 121 EQVSRAEALYRRINQGKPAVPRSDKWLPILQDWLPFILVSQLSFIVGAFLNSSWGFA--L 178
           E++  AE LY  +   +    R  K L +        + S LS      + S    A  L
Sbjct: 121 EEIQAAEPLYEAVQSKQARHLRFYKGLVVRTG-----VFSVLSLFQRLSVRSRLRLAVLL 175

Query: 179 AALLSVPLGLMGLQWQQRGIKRLLRLAEQTTSDPLIAQMYTDSRGVQARLEMSILSQEAR 238
             L+ + L L+G       +  LL +    T D  + +       +  R    ++S    
Sbjct: 176 GGLVPLALTLLGCGATTSIVATLLLM---VTIDRFLQRQIAHPLRLILRQAQQVVSGRRA 232

Query: 239 LKTCLTRLQDTA---EHLNDQARQSNALAHNSSSGLERQRVETEQVATAVNQMAATTQEV 295
               L R+ +       +N      ++L  +  + +      ++Q+A +   ++A T+E 
Sbjct: 233 DSIHLNRVDEIGLLLRVVNQFGLNLHSLVDDVGTQVAGINSVSQQLADSNGDLSARTEET 292

Query: 296 ASHVQRTADATQEANRLTGRGRDIAGETREAIERLSVVVGETGQTVTQ-------LAKDS 348
           ++++Q+TA A ++      +  D A +  +  +  S+   + G  + +       ++  S
Sbjct: 293 SANLQQTAAAIEQITVAVQQSADTATQATQMAQNASLSASKGGDIMAEAVGMMEAISNAS 352

Query: 349 DEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTSESTGQIH 408
            +I  ++ VI  IA QTN+LALNAA+EAARAG  GRGFAVVA EVR LAQ ++ +  +I 
Sbjct: 353 RKIVDIIGVIDSIAFQTNILALNAAVEAARAGVEGRGFAVVAAEVRSLAQHSASAAREIK 412

Query: 409 ALIAKLQQTANNAVQTMDAGHRQAEEGVARVMEADQALVGISEAVANITDMTTQIAAATE 468
            LI              DA     E G A V +A   +  I   V  +  M ++I+ AT 
Sbjct: 413 TLI--------------DANMTSVENGSALVDKAGLHIQDIVNDVQQVATMISEISNATR 458

Query: 469 EQSSVAEEISRNISNISELADQTSDQAHNSALLSEELTRTA 509
           EQ++    I+ +I+ I ++    +     SA  +  L+R A
Sbjct: 459 EQTAALSLINDSIAQIEQMTAGNTGMVDQSAEFATSLSRQA 499



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 14/65 (21%), Positives = 33/65 (50%)

Query: 446 LVGISEAVANITDMTTQIAAATEEQSSVAEEISRNISNISELADQTSDQAHNSALLSEEL 505
           + GI+     + D    ++A TEE S+  ++ +  I  I+    Q++D A  +  +++  
Sbjct: 268 VAGINSVSQQLADSNGDLSARTEETSANLQQTAAAIEQITVAVQQSADTATQATQMAQNA 327

Query: 506 TRTAN 510
           + +A+
Sbjct: 328 SLSAS 332



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 22/140 (15%), Positives = 56/140 (40%), Gaps = 1/140 (0%)

Query: 219 TDSRGVQARLEMSILSQEAR-LKTCLTRLQDTAEHLNDQARQSNALAHNSSSGLERQRVE 277
           T+   + A +E +    E R        ++  A+H    AR+   L   + + +E     
Sbjct: 369 TNILALNAAVEAARAGVEGRGFAVVAAEVRSLAQHSASAAREIKTLIDANMTSVENGSAL 428

Query: 278 TEQVATAVNQMAATTQEVASHVQRTADATQEANRLTGRGRDIAGETREAIERLSVVVGET 337
            ++    +  +    Q+VA+ +   ++AT+E         D   +  +     + +V ++
Sbjct: 429 VDKAGLHIQDIVNDVQQVATMISEISNATREQTAALSLINDSIAQIEQMTAGNTGMVDQS 488

Query: 338 GQTVTQLAKDSDEIGGVVDV 357
            +  T L++ +  +   ++V
Sbjct: 489 AEFATSLSRQALRLTDAINV 508