Pairwise Alignments

Query, 688 a.a., hypothetical protein from Pseudomonas sp. RS175

Subject, 547 a.a., flagellar hook-associated protein FlgK from Escherichia coli ECRC98

 Score =  224 bits (570), Expect = 1e-62
 Identities = 141/451 (31%), Positives = 240/451 (53%), Gaps = 27/451 (5%)

Query: 2   SLLNIGMSGLSASQTALVTTGNNIANVDTAGYSRQQTVQTTKASNQYGNVFIGSGTTLAD 61
           SL+N  MSGL+A+Q AL T  NNI++ + AGY+RQ T+     S      ++G+G  ++ 
Sbjct: 3   SLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQANSTLGAGGWVGNGVYVSG 62

Query: 62  VRRVYNSYLEAQLKTTTSLNSDAAAYQGQITPLDSLLSDSGTGLNGALTKFFASVQNVNA 121
           V+R Y++++  QL+   + +S   A   Q++ +D++LS S + L   +  FF S+Q + +
Sbjct: 63  VQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTSTSSLATQMQDFFTSLQTLVS 122

Query: 122 KPGDDASRQLLLSDAQALSNRFNSVASQLTAQSETINGNLSNMVEQINNLATTVAQLNKK 181
              D A+RQ L+  ++ L N+F +    L  Q + +N  +   V+QINN A  +A LN +
Sbjct: 123 NAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNIAIGASVDQINNYAKQIASLNDQ 182

Query: 182 IAEVS--NSGGAPNDLLDARSETIRQLSTFTGTQV-VENGSSLDIYLGSGQPLVMGNITN 238
           I+ ++   +G +PN+LLD R + + +L+   G +V V++G + +I + +G  LV G+   
Sbjct: 183 ISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVSVQDGGTYNITMANGYSLVQGSTAR 242

Query: 239 KLEAVPDKNDPGRMGIQLNSGS--SVMDLTQVLTGGEIGGLMRYRSTVLDPAMNELGRVA 296
           +L AVP   DP R  +    G+  ++    ++L  G +GG++ +RS  LD   N LG++A
Sbjct: 243 QLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLNTGSLGGILTFRSQDLDQTRNTLGQLA 302

Query: 297 LVVADQMNTIQASGIDKNGAFGSNLFSNINSTAQMSQRSVAALSNSAGSGN--FNVSIED 354
           L  A+  N+   +G D NG  G + F         +    A L N+  +GN     ++ D
Sbjct: 303 LAFAEAFNSQHKAGFDANGDEGEDFF---------AIGKPAVLQNTKNNGNVAIGATVTD 353

Query: 355 TGKLTTNDYKVTFTSATGYIVQRLPDGTSMGAFSTTTTPPP----VIDGFSMTFANGTAA 410
              +   DYK++F +   + V RL   T+      T TP        DG  +TF  GT A
Sbjct: 354 ASAVLATDYKISFDN-NQWQVTRLASNTTF-----TVTPDANGKVAFDGLELTF-TGTPA 406

Query: 411 AGDSFKITPTRNAAGSIKTEMTDSKRLAIAA 441
             DSF + P  +A  ++   +TD  ++A+A+
Sbjct: 407 VNDSFTLKPVSDAIVNMDVLITDEAKIAMAS 437



 Score = 92.0 bits (227), Expect = 6e-23
 Identities = 53/109 (48%), Positives = 67/109 (61%), Gaps = 6/109 (5%)

Query: 579 GSLDNRNGTALAGLQT-AKTVDTGSASKGISLNDAYGKLVEGVGAKAAQGKLDSAATGAI 637
           G  DNRNG AL  LQ+ +KTV  G A    S NDAY  LV  +G K A  K  S   G +
Sbjct: 442 GDSDNRNGQALLDLQSNSKTV--GGAK---SFNDAYASLVSDIGNKTATLKTSSTTQGNV 496

Query: 638 LNNAKNARDSLSGVDLDEETGNLVKFQQYYTASSQIIKAAQEIFSTLIN 686
           +    N + S+SGV+LDEE GNL +FQQYY A++Q+++ A  IF  LIN
Sbjct: 497 VTQLSNQQQSISGVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALIN 545