Pairwise Alignments

Query, 327 a.a., HTH-type transcriptional regulator CdhR from Pseudomonas sp. DMC3

Subject, 312 a.a., AraC-family transcriptional regulator from Caulobacter crescentus NA1000 Δfur

 Score =  244 bits (623), Expect = 2e-69
 Identities = 134/314 (42%), Positives = 194/314 (61%), Gaps = 8/314 (2%)

Query: 1   MPKAIHVLAFANMQILDVTGPLQVFASANDLARQRGMSVPYAPSVIASGGGAVMSSAGLA 60
           M +AI  L +   Q+LD TGP+  F  A  LA        Y+   ++  GG + S++G+ 
Sbjct: 1   MSRAIGFLVYPGFQLLDATGPIAAFEIAGRLAPGA-----YSLHFLSLRGGLIPSTSGMV 55

Query: 61  VLAEPLPQTPS-DTLIIAGGWGIYPAAEDSQLVDWVREHGTHCRRVASVCTGAFLLAASG 119
           V  + L + P  DTL+IAGG  +   A   + + +VR+ G   RRVASVC+G ++LA +G
Sbjct: 56  VQTKALAEAPPLDTLLIAGGDAVKVPASCPETLAFVRQAGRSARRVASVCSGTYVLAEAG 115

Query: 120 WLDGRRVVTHWTRCEQLAAQHPNLHVEANPIFINDGPVWTSAGVTAGIDLALAMVEEDLG 179
            LDG+R  THW+R +    ++P++ +E + I+I DG VW+SAG+TAGIDL+LA++  D G
Sbjct: 116 LLDGKRATTHWSRTKDFQRRYPHVRLEPDRIWIQDGAVWSSAGITAGIDLSLALIGADEG 175

Query: 180 RDIALDVARHLVVFLKRPGGQSQFSVTLALQQQGNRFDELHAWIAENLTCDLGIPTLAEQ 239
             +A   A+ LVV+  RPGGQSQ S  + L+    RFD L +W  +NL+  L +  LA++
Sbjct: 176 EAVARRTAQQLVVYHHRPGGQSQHSALIDLRP--GRFDGLLSWARQNLSEPLSVEQLADR 233

Query: 240 AGMSERSFIRHYRADTGQTPARAIELIRVETARRLLSDTGLPIKRIAANCGFGSEETLRR 299
           A MS R+F R +  +TG TPA+AIE +RVE AR LL    L ++ +A   GFG  E +RR
Sbjct: 234 AAMSPRNFARLFAQETGVTPAKAIERLRVEAARALLDSQPLQVEDVALETGFGDPERMRR 293

Query: 300 SFLRAIGVTPQAYR 313
           +F+RA G  PQA R
Sbjct: 294 AFIRAFGQPPQALR 307