Pairwise Alignments

Query, 650 a.a., hypothetical protein from Pseudomonas sp. DMC3

Subject, 694 a.a., PAS-family GGDEF/EAL protein from Caulobacter crescentus NA1000 Δfur

 Score =  142 bits (359), Expect = 4e-38
 Identities = 129/449 (28%), Positives = 208/449 (46%), Gaps = 28/449 (6%)

Query: 216 EKLKTLFQEQAER---SEKLRTESYQDNLTGLANRRYFEMQLNNRVSNPEQASSGY-LLL 271
           EKL  LF++  +R   +E + T +++D LTGL NR  F+ +    VS  E     + L++
Sbjct: 247 EKLVNLFKDITDRRRQTEAIETLAFKDPLTGLPNRTLFQHRFQEAVSASETLGEMFGLIM 306

Query: 272 LRVKDLAGLNQRLGGQRTDQLLKAVGEQLTRECARYPQTQDLVTRIRGGEFAVLAPGLVR 331
           + V     +N  LG    D LLK +   L        +T D V R+ G EFAV+  GL  
Sbjct: 307 IDVDHFKDINDTLGHDAGDALLKRLAGMLQHAF----RTGDTVARLGGDEFAVILRGLHG 362

Query: 332 E-EALQLAQNLDNALSSLHATGATDVPAVASIGLAPFAHGD---SPQAVLTLGDQALAQA 387
           E +  +  + L + L      G     A ASIG A   HGD    P  ++   D AL +A
Sbjct: 363 EADMTRPIEALQDLLRRPIQHGGRSFTASASIGAA--LHGDLDADPAHMIKNADIALYRA 420

Query: 388 EGQGEQNWACIDQSLVAEVGDDHHAWHRLLDQALSQQRFELYFQPVVAAQDTQLVLHYKV 447
           +  G       + S+ +EV +      R +  AL++  F LY+QPVV  ++ ++     +
Sbjct: 421 KEAGRNRSIVFEPSMRSEV-ERRLELLRDVRAALTENEFTLYYQPVVDIRENRVAGFEAL 479

Query: 448 LSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMKGHEDS------LALNLS 501
           +  +  EQG   PA RF+   E    + +L  +  E  L+QM+   D       +A+N+S
Sbjct: 480 MRWVHPEQGVLTPA-RFMAAFEDQDLSLKLGDVAFETALKQMRAWLDEGVEFGRVAVNIS 538

Query: 502 SATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQA--VLEQLTRRLRELGFSLSL 559
           SA     +   ++ E L   S    RLT+E+ E         ++ +  RRL E G  ++L
Sbjct: 539 SAQFRSGRLAEEIQERLARWSVPCERLTIEVTENVYMGWGSDLVSETVRRLHEAGVMIAL 598

Query: 560 QRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERV 619
             FG  ++ + NL +  +  LKID S++    Q  +    ++A+     S+ + ++AE V
Sbjct: 599 DDFGTGYASLANLRQFPIDRLKIDKSFV----QNGEDEAIVKAVITLGTSMGMKVVAEGV 654

Query: 620 ETEGELSVIREMGLYGVQGQLLGEPKPWG 648
           E   +L  +   G   +QG   G P P G
Sbjct: 655 EDAEQLEALARYGCDQIQGYHFGRPMPAG 683