Pairwise Alignments

Query, 636 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

Subject, 641 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas fluorescens GW456-L13

 Score =  340 bits (871), Expect = 1e-97
 Identities = 240/639 (37%), Positives = 342/639 (53%), Gaps = 33/639 (5%)

Query: 6   LSRHARQVLTVTQGKPHLHGPGAD----PSIARSWLRCLED-YHLDPSVTMAPTVLEHGR 60
           L R AR    + + K HL G   D      I  SW R L    H +    +A   LE   
Sbjct: 18  LHREAR----LAREKLHLEGEVPDGVLRAEIDASWRRSLSHGVHFNAKHELA---LESSA 70

Query: 61  VLESRERLQQVLQIAGTEMSSLHQQLSGAGHAVLLTDARGVILNCVTAPAERKIFERAGL 120
            L+      ++L  A         +  G    ++L ++   IL  V   A+R   + +GL
Sbjct: 71  SLDVLLASNRLLIDAALPAIDYLAERQGKEGLIILANSDATIL-AVEGRADR--LKGSGL 127

Query: 121 W---LGADWSEACEGTNGIGTCLVERQALTIHQDEHFRGRHTGLTCSASPVFDPHGELLA 177
               LG  WSEA  GTN +GT LVE +   I   EH+  R +  +C++ P+  P G++L 
Sbjct: 128 QDITLGTCWSEAVRGTNALGTALVEARPTLIDCGEHYLDRLSDFSCTSVPIHCPQGDILG 187

Query: 178 VLDVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRCFDNQWLLRFHLQAESVGLFSEG 237
           VLD++   P + R     + AL+ ++   IES  F   + ++ +L FH + + +    +G
Sbjct: 188 VLDLTREGP-LGRAHD--STALLAMAVSQIESRVFNASYPDEIVLAFHSRRQYLESPWQG 244

Query: 238 LLAFDGEGRISAVNQSALNLLGHIRGGLLGKPVEAFFDCSLDDLLGRASANASASWPLRT 297
           LLA    G+I AV+  A  LL   R  L+G+  E F       LL R     + S  L+T
Sbjct: 245 LLAVSLGGQILAVSAQACQLLHAERSALVGRRCEEFLGVDGLQLLARLHQGGAGS--LQT 302

Query: 298 RDGRHLFAVLRGESRK-PTAIVPAPIAAPA---PRLSGICLGDEALQAEFRKALRVFERD 353
             G   +  LR   R    +  P  +A PA   P L  +   +       R A +    +
Sbjct: 303 AKGEFFYKTLRAPQRSINVSSPPRTVAKPAKAQPDLEALAGSNTRYARALRMARQGLANE 362

Query: 354 VPLLINGETGSGKEAFAKAVHQASQRSGNAFVALNCAAIPESLIESELFGYRGGSFTGAR 413
           +P+L+ GETG+GKE  A+A+H A  R    FVA+NCAAIPE LIESELFGYR G+FTG+R
Sbjct: 363 LPVLLLGETGTGKEVIARALHMAGARCDKPFVAVNCAAIPEGLIESELFGYREGAFTGSR 422

Query: 414 KDGMRGKLQQADGGTLFLDEIGDMPLALQTRLLRVLEDRQVVPIG-GEPQAVDVRIISAT 472
           + GM G+LQQA GGTLFLDEIGDMPLALQ RLLRVL+DR+V P+G GE Q +DV +I AT
Sbjct: 423 RGGMVGRLQQAHGGTLFLDEIGDMPLALQARLLRVLQDRKVAPLGAGEEQDIDVALICAT 482

Query: 473 HRNLLERVEDGSFREDLYYRLNGLEVALPALRERSDKSQLLDFLLAEEAGGETILIDEPA 532
           HR+L   VE+  FREDL+YR+NG+ V LPALRER D   L+  +L    G   +++ +  
Sbjct: 483 HRDLKRLVEEKHFREDLFYRVNGISVMLPALREREDFGALVTRMLT-TLGAPAVVLHDDL 541

Query: 533 RQALLAFNWPGNVRQLRNVLRTLAALCDGGR--VGVEDLPVMIRQARPAVVAAQIVAQPL 590
            + L  + WPGN+RQL  VLRT  A+ + G   + ++ LP  +          Q  A  +
Sbjct: 542 DRLLNGYQWPGNIRQLEMVLRTALAMREPGDTVLTLDHLPDSMLDELTTSERPQ--AGSI 599

Query: 591 DDAERVALLNALEQTRWHMTHTAEQLGVSRNTLYRKLRK 629
            + E   +  +L+  + +++  A+ LG+SR TLYRKL++
Sbjct: 600 RENELELIRQSLDTHQGNVSAAADALGISRATLYRKLKQ 638