Pairwise Alignments

Query, 636 a.a., Acetoin catabolism regulatory protein from Pseudomonas sp. DMC3

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  348 bits (893), Expect = e-100
 Identities = 236/593 (39%), Positives = 341/593 (57%), Gaps = 40/593 (6%)

Query: 56  LEHG---RVLESRERLQQVLQIAGTEMSSLHQQLSGAGHAVLLTDARGVILNCVTAPAER 112
           LE G   R+L  R RL  ++     E+  L  +   AG  V+L DA+    N +    ++
Sbjct: 62  LEQGHDLRLLLERNRL--LIDAVTPELDYLVARQGKAG-IVILGDAQA---NVLAIEGQK 115

Query: 113 KIFERAGL---WLGADWSEACEGTNGIGTCLVERQALTIHQDEHFRGRHTGLTCSASPVF 169
            + +R GL     G+ WSE+  GTN IGT +VE +   I+  EH+  R +  +C++ P+ 
Sbjct: 116 HVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLR 175

Query: 170 DPHGELLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIESCYFLRCFDNQWLLRFHLQAE 229
           DP GE++ VLD++  R  V  Q Q  +++ + L+A  IES  F  C  +Q +L FH + +
Sbjct: 176 DPRGEVIGVLDIT--REGVMAQPQ-DSLSTLMLAAGNIESRLFGLCHPDQLVLAFHSRPQ 232

Query: 230 SVGLFSEGLLAFDGEGRISAVNQSALNLLGHIRGGLLGKPVEAFFDCSLDDLLG-RASAN 288
            +     GLLA   +G + A N  A  LL   R  L+G+           DLLG R+ A 
Sbjct: 233 YLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHELIGR--------RSTDLLGERSPAF 284

Query: 289 ASASWP-----LRTRDGRHLFAVLR----GESRKPTAIVPAPIAAPAPRLSGICLGDEAL 339
            +  W      ++T  G   F  L+    G     T      ++  +P L  +  GD+ L
Sbjct: 285 IARLWQGGVSSVQTAKGEFYFRALQLPRHGRVTPSTPSSKPALSKQSPALDALAGGDQRL 344

Query: 340 QAEFRKALRVFERDVPLLINGETGSGKEAFAKAVHQASQRSGNAFVALNCAAIPESLIES 399
               R A +     +P+L+ GETG+GKE  A+A+HQAS R+   FVA+NCAAIPE LIES
Sbjct: 345 ARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQASPRADKPFVAVNCAAIPEGLIES 404

Query: 400 ELFGYRGGSFTGARKDGMRGKLQQADGGTLFLDEIGDMPLALQTRLLRVLEDRQVVPIG- 458
           ELFGYR G+FTG+R+ GM G+L QA GGTLFLDEIGDMPLALQ RLLRVL++R+V P+G 
Sbjct: 405 ELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGA 464

Query: 459 GEPQAVDVRIISATHRNLLERVEDGSFREDLYYRLNGLEVALPALRERSDKSQLLDFLLA 518
           G+ Q +DV +I ATHR+L   V++  FREDL+YR+NG+ + LPALRER D + ++  LL 
Sbjct: 465 GDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNGVSLRLPALRERDDLAAIIQGLLD 524

Query: 519 E-EAGGETILIDEPARQALL-AFNWPGNVRQLRNVLRTLAALCDGGRVGVEDLPVMIRQA 576
           + +A G T+   +PA  ALL  F+WPGN+RQL  V+RT  A+ + G   V  L  +    
Sbjct: 525 KADARGVTL---DPALTALLEGFDWPGNIRQLEMVVRTALAMREDGE-QVLTLDHLTDCL 580

Query: 577 RPAVVAAQIVAQPLDDAERVALLNALEQTRWHMTHTAEQLGVSRNTLYRKLRK 629
              + ++   +  L D+E   +  AL + + +++  A  LG+SR TLYRKL++
Sbjct: 581 LDELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAAALGISRATLYRKLKQ 633