Pairwise Alignments

Query, 727 a.a., DNA helicase II from Pseudomonas fluorescens SBW25

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  623 bits (1606), Expect = 0.0
 Identities = 354/804 (44%), Positives = 486/804 (60%), Gaps = 91/804 (11%)

Query: 6   SLLLNSLNDAQRQAVAAPVGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSILSVTFT 65
           S LL  LN  Q  AV  P    L+LAGAGSGKTRVL  RIAWL+Q    SP  IL+VTFT
Sbjct: 12  SPLLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFT 71

Query: 66  NKAAAEMRHRIEQLMGISPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDDQQRLV 125
           NKAA EM  R+  ++ I+  GMW+GTFHGL +R LRAH + A L  TFQILD+ DQ   +
Sbjct: 72  NKAAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAI 131

Query: 126 KRVIRELGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRSIYEAYEAACVR 185
           KR+ ++  +D++R+P +Q Q+FI+G K++G RP  + A  +     +  +Y  YE  C R
Sbjct: 132 KRLCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARDEETRKKLE-LYALYEEQCQR 190

Query: 186 AGVIDFSELLLRALDLWRDNPGLLAHYQKRFRHILVDEFQDTNAVQYAWLRL-------- 237
            GV+DF EL+LR+ ++ RDN  +  HYQ+RFRHIL+DEFQDTN +QYAW+++        
Sbjct: 191 EGVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEG 250

Query: 238 LAKGGDSLMVVGDDDQSIYGWRGAKIENIYQYSEDFPDAVTIRLEQNYRSTAGILKAANA 297
           L   G+++  VGDDDQSIY +RGA++ N+  +  +F     I+LEQNYRS + IL +AN 
Sbjct: 251 LTPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQ 310

Query: 298 LIANNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYR 357
           LI++NT RLGK L TD G GE + ++ A ++  EA+++V+ ++   + G+ RS++A+LYR
Sbjct: 311 LISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVLYR 370

Query: 358 SNAQSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINIPA 417
           SNAQSRV+E AL    +PYR+YGG RFFERAEIK+A+AYLRLLE   +D +  RV+N P 
Sbjct: 371 SNAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPP 430

Query: 418 RGIGEKTVEAIRDHARHADVSMWEAMRLLIANKGLTGRAAGALGVFVELIENLAAKCAEM 477
           RGIG +++E ++D AR +  S+ +A+        +TGRA  A+G F   I+ +  +    
Sbjct: 431 RGIGARSIEQLQDVARTSGCSLHDAV------SAVTGRAGVAVGNFAAKIDVMREQTEGR 484

Query: 478 PLHLMTQTVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARAF---------------- 521
            L  + + V+  SGLI ++  E+  +GQ RVENLEELV+AA +F                
Sbjct: 485 TLREIIELVLAHSGLIEHYRGER--EGQDRVENLEELVNAAESFVSIEGFGRDAVALPVD 542

Query: 522 ---------------------------ENTEEDEELTPLAAFLGHASLEAGDTQADEHED 554
                                       + E  E L+PLAAFL HA+LE+GD QA   +D
Sbjct: 543 ELGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQD 602

Query: 555 SIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMQNLVM 614
           ++QLMT+H+AKGLEF  VF+ GMEEGLFPH+ S+ +   LEEERRL YV ITRA + L +
Sbjct: 603 AVQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLYL 662

Query: 615 TYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSV-SRPF--GGGQQQNSSSMFAGS 671
           ++++TR L+G   YN  SRF  E+P+  ++ +       S P   GGGQ QN    F G+
Sbjct: 663 SHSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQPAWSAPMGGGGGQWQNGRRGFGGA 722

Query: 672 -----------------------EIPE----TQFSLGQQVRHSVFGEGVILNFEGAGAQA 704
                                    PE    T+   G  V H+ FGEG +L  EGAG  A
Sbjct: 723 PAALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGDDA 782

Query: 705 RVQVNFA-EGSKWLMMGYAKLEAI 727
           R QVNF   G+KWL +  AKL  I
Sbjct: 783 RAQVNFTRHGTKWLALSVAKLTPI 806