Pairwise Alignments

Query, 628 a.a., DEAD/DEAH box helicase from Pseudomonas fluorescens SBW25

Subject, 454 a.a., RNA helicase (NCBI) from Escherichia coli BW25113

 Score =  487 bits (1254), Expect = e-142
 Identities = 261/469 (55%), Positives = 332/469 (70%), Gaps = 17/469 (3%)

Query: 1   MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
           MSF SLGLS  ++RA+   GY EPTP+QQ+AIPAVL+GRDLM +AQTGTGKT GF LP+L
Sbjct: 1   MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN 120
           + L       +    G R  R L+LTPTRELAAQ+ ++ + Y++ L   S  +FGGV +N
Sbjct: 61  QHLITR----QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSIN 116

Query: 121 PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR 180
           PQ+  +  GVDVLVA PGRLLDL  Q +V L  VEILVLDEADRMLDMGF+HD+++VL +
Sbjct: 117 PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTK 176

Query: 181 LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL 240
           LPAKRQNLLFSATFS DI ALA KLLHNP  IEV   NT  +++ Q V  +    KR LL
Sbjct: 177 LPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKKRKRELL 236

Query: 241 AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV 300
           +H+I  G W+QVLVFTRTKHGAN LAE L+K G+ + AIHGNKSQ ART+ALADFK+G +
Sbjct: 237 SHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDI 296

Query: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL 360
           R+LVATDIAARGLDI++LPHVVN+ELPNV EDYVHRIGRTGRA  +GEA+SLV  DE KL
Sbjct: 297 RVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKL 356

Query: 361 LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG 420
           L+ IE++ K++I    + G++        P ++  P     +N R  +G G  G GGG G
Sbjct: 357 LRDIEKLLKKEIPRIAIPGYEPD------PSIKAEP----IQNGRQQRGGGGRGQGGGRG 406

Query: 421 RRDKGKDKGGKEKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAA 469
           ++   + +GG + A      E+P+R  +  +  PA EQ++  +P + AA
Sbjct: 407 QQQPRRGEGGAKSASAK-PAEKPSR--RLGDAKPAGEQQRRRRPRKPAA 452



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 493 QAKPAQ-GRGRRPGAPAQGAGAGAPRGGQPQGARQNGPRNSSGG--TTGTPPAKRSGPRN 549
           +A+P Q GR +R G    G G G  RG       Q  PR   GG  +    PA++   R 
Sbjct: 383 KAEPIQNGRQQRGGG---GRGQGGGRG-------QQQPRRGEGGAKSASAKPAEKPSRRL 432

Query: 550 GAPRDGQARREDSRSNNRRPA 570
           G  +   A  +  R   R+PA
Sbjct: 433 GDAK--PAGEQQRRRRPRKPA 451