Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 1300 a.a., putative ATP-dependent helicase from Escherichia coli BL21

 Score =  244 bits (622), Expect = 3e-68
 Identities = 160/467 (34%), Positives = 255/467 (54%), Gaps = 28/467 (5%)

Query: 2   NSLPID----DVLPALRDALAIRHEAVLEA-PPGAGKTTRVPLALLNEPWLTGQTILMLE 56
           ++LP+     D+L A+RD     H+ V+ A   G+GKTT++P   +         I   +
Sbjct: 75  DNLPVSQKKQDILEAIRD-----HQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQ 129

Query: 57  PRRLAARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALD 116
           PRRLAAR  A R+A EL  + G  +GY++R  + V  NT ++++T+GIL   +Q D  L 
Sbjct: 130 PRRLAARTVANRIAEELKTEPGGCIGYKVRFSNHVSDNTMVKLMTDGILLAEIQQDRLLM 189

Query: 117 GVGLLIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPI 176
               +I DE HERSL+ D  L      +EL      LKI++ SAT++ ER +   ++API
Sbjct: 190 QYDTIIIDEAHERSLNIDFLLGYL---KELLPRRPDLKIIITSATIDPERFSRHFNNAPI 246

Query: 177 LRSEGRMFPVQMRWGRPYQPGEFIEPRVVQTILEAL----HDETGSVLVFLPGQAEIRRV 232
           +   GR +PV++R+    +  +  E   +Q I +A+     +  G +L+F+ G+ EIR  
Sbjct: 247 IEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILIFMSGEREIRDT 306

Query: 233 SQQLADALGDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRV 292
           +  L       T++L  PL+  L  N+++  +  + +G+R +VLATN+AETSLT+ G++ 
Sbjct: 307 ADALNKLNLRHTEIL--PLYARLS-NSEQNRVFQSHSGRR-IVLATNVAETSLTVPGIKY 362

Query: 293 VIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAA 352
           VID G AR+ R+   + + RL  + IS+ASA QR GR GR+  G+C RL+SED       
Sbjct: 363 VIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPE 422

Query: 353 YGSAEILAADLAGLALQLARWGVTP-AQLVWLDVPPTAAYAQAQDLLQRLGALNDD---- 407
           +   EIL  +LA + LQ+   G+   A   +++ P          LL+ LGA+  D    
Sbjct: 423 FTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQAS 482

Query: 408 --TLTAHGQKMAELPAHPRIAHLLLRGQDLGLAATACDVAALLGERD 452
              LT  G+++++LP  PR+A ++L  Q  G    A  + + L  +D
Sbjct: 483 AYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQD 529