Pairwise Alignments

Query, 836 a.a., ATP-dependent helicase HrpB from Pseudomonas fluorescens SBW25

Subject, 809 a.a., putative ATP-dependent helicase from Escherichia coli BL21

 Score =  678 bits (1749), Expect = 0.0
 Identities = 398/837 (47%), Positives = 529/837 (63%), Gaps = 36/837 (4%)

Query: 1   MNSLPIDDVLPALRDALAIRHEAVLEAPPGAGKTTRVPLALLNEPWLTGQTILMLEPRRL 60
           M+SLP+  VLP L  AL    + +L AP GAGK+T +PL LL  P + G+ I++LEPRRL
Sbjct: 1   MSSLPVAAVLPELLTALDCAPQILLSAPTGAGKSTWLPLQLLAHPGINGK-IILLEPRRL 59

Query: 61  AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQDDPALDGVGL 120
           AAR  A+RLA  L EK G+TVGYR+R  + VGPNTR+EVVTEG+LTR +Q DP L GVGL
Sbjct: 60  AARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEGVLTRMIQRDPELSGVGL 119

Query: 121 LIFDEFHERSLDADLALALSLNGRELFRDEQPLKILLMSATLEGERLASLLDDAPILRSE 180
           +I DEFHERSL ADLALAL L+ ++  RD+  LK+L+MSATL+ +RL  +L +AP++ SE
Sbjct: 120 VILDEFHERSLQADLALALLLDVQQGLRDD--LKLLIMSATLDNDRLQQMLPEAPVVISE 177

Query: 181 GRMFPVQMRWGRPYQPGEFIEPRVVQTILEALHDETGSVLVFLPGQAEIRRVSQQLADAL 240
           GR FPV+  +  P    +  +  V     E L  E+GS+L+FLPG  EI+RV +QLA  +
Sbjct: 178 GRSFPVERHY-LPLPAHQRFDEAVAVATAEMLRQESGSLLLFLPGVGEIQRVQEQLASRI 236

Query: 241 GDRTDVLLCPLHGELDLNAQRAAIDPAPAGKRKVVLATNIAETSLTINGVRVVIDAGLAR 300
           G  +DVLLCPL+G L LN QR AI PAP G RKVVLATNIAETSLTI G+R+V+D    R
Sbjct: 237 G--SDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAETSLTIEGIRLVVDCAQER 294

Query: 301 VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEDQHEGLAAYGSAEILA 360
           V RF+P +G+TRL TQR+S+AS TQRAGRAGRLEPG+C  L +++Q E  AA    EIL 
Sbjct: 295 VARFEPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLHLIAKEQAERSAAQSEPEILQ 354

Query: 361 ADLAGLALQLARWGVT-PAQLVWLDVPPTAAYAQAQDLLQRLGALNDDTLTAHGQKMAEL 419
           +DL+GL ++L +WG + PAQ+ WLD PP      A+ LLQ LGAL+ + L+A GQKMA L
Sbjct: 355 SDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLMAAKRLLQMLGALDGERLSAQGQKMAAL 414

Query: 420 PAHPRIAHLLLRGQDLGLAATACDVAALLGERDILRGGGADLHSRLALLSGEERARGSQG 479
              PR+A +L+  ++   AATA  +AA+L E    R G +DL        G   +R    
Sbjct: 415 GNDPRLAAMLVSAKNDDEAATAAKIAAILEEPP--RMGNSDL--------GVAFSRNQPA 464

Query: 480 GVQRAKQLARQYRGYLRGQAAQPVADPDHPRWLGALLALAYPDRVAQQRRPGGAEYRLAN 539
             QR++QL ++    +RG  A           +  LLA A+ DR+A +R   G  Y+LAN
Sbjct: 465 WQQRSQQLLKRLN--VRGGEAD-------SSLIAPLLAGAFADRIAHRRGQDG-RYQLAN 514

Query: 540 GRAAVFAEADSLMKQPWLVIADLGSRQGQREERIYLAADFDPMLFDTVLAEQVCNVDQLD 599
           G  A+    D+L +  WL+   L       + RI LA   D         + V   D ++
Sbjct: 515 GMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQLVQQSDTVE 574

Query: 600 WDEREGVLRAERQRKVGELVLSREPLTGLDESARSQALVNLVRRKGLELLPWTPELRQWQ 659
           WD+ +G L+A R+ ++G+L +  +PL    E    QA++N +R KGL +L WT E  Q  
Sbjct: 575 WDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVLNWTAEAEQ-- 632

Query: 660 ARVMLLRQLDAGK---TSEWPDISDKALLASLEHWLMPYLGKVSRLSHFASLDISSFLHN 716
              + LR L A K     +WP + +++LLA+LE WL+P++  V  L    SLDI   L  
Sbjct: 633 ---LRLRLLCAAKWLPEYDWPAVDNESLLATLETWLLPHMTGVHSLRGLKSLDIYQALRG 689

Query: 717 LLPWPLPQRLDELAPQHVKVPSGSSVRLDYSE-QPPILAVRLQELFGLADTPRIAGGRQV 775
           LL W + QRLD   P H  VP+GS + + Y E  PP LAVR+QE+FG A  P IA GR  
Sbjct: 690 LLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATNPTIAQGRVP 749

Query: 776 VKLHLLSPARRPVQVTQDLANFWRSTYAEVKKDLKGRYPKHYWPDDPLVAEATARIK 832
           + L LLSPA+RP+Q+T+DL+ FW+  Y EV+K++KGRYPKH WPDDP     T R K
Sbjct: 750 LVLELLSPAQRPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTK 806