Pairwise Alignments

Query, 1149 a.a., exodeoxyribonuclease V subunit gamma from Pseudomonas fluorescens SBW25

Subject, 1122 a.a., exonuclease V (RecBCD complex), gamma chain from Escherichia coli BL21

 Score =  666 bits (1719), Expect = 0.0
 Identities = 452/1144 (39%), Positives = 613/1144 (53%), Gaps = 131/1144 (11%)

Query: 13   VVHGNRLDELRSLVVSWMRRYPLA-PLENEIALVQSNGIAQWLKLALAEDPEDDDMGGCG 71
            V H NRLD L +L+   + R  L  P E E+ LVQS G+AQWL++ L++          G
Sbjct: 4    VYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQWLQMTLSQK--------FG 55

Query: 72   IAAAIDVQLPGSFMWQLYRMVLGRDEIPPKSLLDKAPLTWRLMRLLPELIDQPHFEPLQR 131
            IAA ID  LP SF+W ++  VL   EIP +S  +K  ++W+LM LLP+L+++  F  L+ 
Sbjct: 56   IAANIDFPLPASFIWDMFVRVL--PEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRH 113

Query: 132  FLTHDTDLRKRYQLAERLADLFDQYQVYRADWLEDWAAGRHQLRNGRGESKPLNLANCWQ 191
            +LT D+D RK +QL+ + ADLFDQY VYR +WL  W  G   L  G GE      A  WQ
Sbjct: 114  YLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGH--LVEGLGE------AQAWQ 165

Query: 192  AELWRALLLDVGEEGMAE-SRAGVHQRFIERINTLEHAPPGLPSRVIVFGISSLPAQALE 250
            A LW+AL+    E G     RA ++QRFIE + +    PPGLPSRV + GIS+LP   L+
Sbjct: 166  APLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225

Query: 251  ALAGLARFSQVLLCVHNPCRHHWSDIVADKDLLRNEYKRQARKS----GMPVTIDPQTLH 306
            AL  L +  ++ L   NPCR++W DI  D   L     RQ R S     +P+  D +   
Sbjct: 226  ALQALGKHIEIHLLFTNPCRYYWGDI-KDPAYLAKLLTRQRRHSFEDRELPLFRDSENAG 284

Query: 307  QH---------AHPLLAAWGKQGRDYISLLDSYDDPNSYRAAFRDGRIDLFSDSEPTTLL 357
            Q           +PLLA+WGK GRDYI LL   +             +D F D  P  LL
Sbjct: 285  QLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQE---------LDAFVDVTPDNLL 335

Query: 358  NQLQDDILELRP---LNETRELWPAVDLDR-----DTSIRFHIAHSAQREVEILHDQLLQ 409
            + +Q DILEL          E +   D  R     D+SI FH+ HS QREVE+LHD+LL 
Sbjct: 336  HNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLA 395

Query: 410  RFSADPALRPRDIIVMVPDVDSYAPHIRAVFGQLERNDPRFIPFTLTDQGQRGRDPLLIA 469
                DP L PRDIIVMV D+DSY+P I+AVFG    +  R++P+ ++D+  R   P+L A
Sbjct: 396  MLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPAD--RYLPYAISDRRARQSHPVLEA 453

Query: 470  VEHLLKLPDSRFPVSEILDLLDVPALRERFAIKERDLPTLHRWIEGAGIRWGLNAEQRAG 529
               LL LPDSRF   ++L LLDVP L  RF I E  L  L +W+  +GIRWG++ +    
Sbjct: 454  FISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRE 513

Query: 530  LGLPTELEQNSWRFGLRRMLLGYAVGTGAA-CDGIEPYDEIGGLDAALIGPLVALLDALN 588
            L LP    Q++WRFGL RMLLGYA+ +       + PYDE  GL A L+G L +LL  LN
Sbjct: 514  LELPAT-GQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLN 572

Query: 589  DAHQALSQPAPPRVWGERLQRLMQLFFLPSSEHDDYLLGQLEQLRETWLET-CESVGLQ- 646
               + L+Q  P   W    + ++  FFLP +E +      +  + + W     E +G Q 
Sbjct: 573  IWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETE----AAMTLIEQQWQAIIAEGLGAQY 628

Query: 647  -DELPLTVVREAWLAGLDQGRLSQRFLAGAVNFCTLMPMRAIPFKLVCLLGMNDGDYPRA 705
             D +PL+++R+     LDQ R+SQRFLAG VN CTLMPMR+IPFK+VCLLGMNDG YPR 
Sbjct: 629  GDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQ 688

Query: 706  QPPLDFDLMGSDYRPGDRSRREDDRYLLLEALLSARDQLYISWVGRSIRDNSDRPASVLI 765
              PL FDLM    + GDRSRR+DDRYL LEAL+SA+ +LYIS++GRSI+DNS+R  SVL+
Sbjct: 689  LAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLV 748

Query: 766  GQLRDHLASGWHHANSDEPL--------IDA-MTQEHPLQPFSARYFHEGDALFSYAREW 816
             +L D++    H+   DE L        + A +T  H   PF  + +  G+   SYAREW
Sbjct: 749  QELIDYIGQS-HYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGERQ-SYAREW 806

Query: 817  QLLHEASDALPTEHDLA---PHQQEEPLSLGQLQDFLRNPVKHFFSQRLKVFFEAAEVPL 873
              L  AS A     +     P    E + L  LQ F  +PV+ FF  RL+V F   +  +
Sbjct: 807  --LPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVNFRTEDSEI 864

Query: 874  ADEEPFVLDALQRYSLSDSLLSAALTQPDHLDQALNAQAL--RLQGSGLLPMVGFGECLR 931
             D EPF+L+ L RY ++  LL+A + Q D       A+ L  R + +G LP   FGE   
Sbjct: 865  PDTEPFILEGLSRYQINQQLLNALVEQDD-------AERLFRRFRAAGDLPYGAFGEIFW 917

Query: 932  NELIEPLPDLLRRYQQLLALWPTPHPG-AEPVSFEHHGVQLEGWISGLHRRSDG------ 984
                + +  L  R      +     PG +  +    +GVQ+ GW+  +  + DG      
Sbjct: 918  ETQCQEMQQLADR------VIACRQPGQSMEIDLACNGVQITGWLPQV--QPDGLLRWRP 969

Query: 985  GLLSVTTIPNSIGSIKTRKWHRLIRPWVNHVVACACGLPLSTGL-VASDDTLLLPPLDTS 1043
             LLSV                + ++ W+ H+V CA G    + L +  D     PPL   
Sbjct: 970  SLLSVA---------------QGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAE 1014

Query: 1044 NAREILCNLLLAWHTGMSKPLPVAVKTAFAWL-----SQTDPV--------KAEAAASKT 1090
             A   L  L+  +  GMS PL V  ++  AWL     +Q D +        KA     + 
Sbjct: 1015 QALHYLSQLIEGYREGMSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQA 1074

Query: 1091 YEGD 1094
            YEG+
Sbjct: 1075 YEGN 1078