Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens SBW25

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit from Escherichia coli BL21

 Score =  773 bits (1997), Expect = 0.0
 Identities = 511/1222 (41%), Positives = 689/1222 (56%), Gaps = 74/1222 (6%)

Query: 8    LAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDEAGFGRELLPPQILVVTFTDAAT 67
            L  PL+G +LIEASAGTGKTFTI+ALYLRL+LG GG  A F R L   ++LVVTFT+AAT
Sbjct: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGS-AAFPRPLTVEELLVVTFTEAAT 69

Query: 68   KELRERIRIRLAEAA-RFFREEIEQP--DALIADLRAEYPPEQWPACANRLDIAAQWMDE 124
             ELR RIR  + E      RE  + P  + L+ ++  +    QW      L +A + MDE
Sbjct: 70   AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW------LLLAERQMDE 123

Query: 125  AAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWV 184
            AAV TIH +CQRML  +AF+SG LF Q L  D S L  +   D+WR  CYP+  +    V
Sbjct: 124  AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183

Query: 185  RSNWGGPAALMPRVRALFGSERPTGETREPAELINACLQERREA-LQTLKAPWQQWAAEL 243
               W GP AL+  +      E P  +   P +   A    +  A + T+K  W+    EL
Sbjct: 184  FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243

Query: 244  RDICLQAVAAKTVDGRKMQARYFEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAW 303
              +    + +  +D RK        W +KISAWA +ET     +     + +   + +  
Sbjct: 244  DAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEET-NSYQLPESLEKFSQRFLEDRT 298

Query: 304  K--GEPPQHPGIDAMAGLKAALDALPTPDAAVLQHAAGWVGKRFEDEKRRRAEMGFDDML 361
            K  GE P+HP  +A+  L A  + L   D  V+  A   + +    EKRRR E+GFDDML
Sbjct: 299  KAGGETPRHPLFEAIDQLLA--EPLSIRDL-VITRALAEIRETVAREKRRRGELGFDDML 355

Query: 362  IRLNAALQADGGERLASVIREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHLDSGLFLI 421
             RL++AL+++ GE LA+ IR +FPVA+IDEFQDTDP QY IF    RI  +  ++ L LI
Sbjct: 356  SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFR---RIWHHQPETALLLI 412

Query: 422  GDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAF 481
            GDPKQAIYAFRGADI+TY++AR S    H+TL TN+RS+  MV +VN +F + +    AF
Sbjct: 413  GDPKQAIYAFRGADIFTYMKAR-SEVHAHYTLDTNWRSAPGMVNSVNKLFSQTDD---AF 468

Query: 482  LFREPNGENPVPFHSVLSQGRKEQLQV--NGQTLPAMNLWHLPTDQPVSNAVYRQQLAAA 539
            +FRE      +PF  V S G+ + L+    G+T PAM +W L   +      Y+  +A  
Sbjct: 469  MFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMW-LMEGESCGVGDYQSTMAQV 521

Query: 540  CATHIVELLNGGQQGTAGFLRPDVSFTGVLPSDIAILVRDGKEAQAVRTELAARGVRSVY 599
            CA  I + L  GQ+G A  +  D +   V  SDI++LVR  +EA  VR  L    + SVY
Sbjct: 522  CAAQIRDWLQAGQRGEALLMNGDDA-RPVRASDISVLVRSRQEAAQVRDALTLLEIPSVY 580

Query: 600  LSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWES 659
            LS++DSVF   EA ++L  L+A   P+ E  LR+ALA   + L+  ++E LN DE AW+ 
Sbjct: 581  LSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHAWDV 640

Query: 660  RVMQFRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASE 719
             V +F GYR IWR +GV+PMLR L+    + + L+A + GER LT++LH+SELLQ+A ++
Sbjct: 641  VVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEAGTQ 700

Query: 720  LDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSA 779
            L+ E AL+R L++H+         Q +RLESD+ LV++VTIHKSKGLEY LV+LPFI + 
Sbjct: 701  LESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFITNF 760

Query: 780  KPVDGSRLPLHYHDEHG-KSHVSLRPTPELIAQADNERLAEDLRLLYVALTRAKHACWLG 838
            +  + +     YHD H  ++ + L   PE +  A+ ERLAEDLRLLYVALTR+   C LG
Sbjct: 761  RVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHCSLG 816

Query: 839  IADL--KRGNSNSSV-LHLSALGYLLGAGASLGESAGLARWLLDLQAGCPAIDYAQVPEA 895
            +A L  +RG+      +H SALG LL  G    ++AGL   +  L     A   AQ+ + 
Sbjct: 817  VAPLVRRRGDKKGDTDVHQSALGRLLQKGEP-QDAAGLRTCIEALCDDDIAWQTAQIGDN 875

Query: 896  QPIVFHPPRNEATLRAPLLPKRKAAENWWIASYSALRIGDSMSAATLEAPESPQAQKLFD 955
            QP   +   + A L A  L +R   +NW + SYS L+      A  L             
Sbjct: 876  QPWQVNDV-STAELNAKTL-QRLPGDNWRVTSYSGLQQRGHGIAQDLM------------ 921

Query: 956  DERLDPDAPREVAASGGDI---HRFPRGPNPGTFLHGLLEWAGEEGFNVTPEAIEKAVGA 1012
              RLD DA    +         H+FPRG +PGTFLH L      E  + T       V  
Sbjct: 922  -PRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLF-----EDLDFTQPVDPNWVRE 975

Query: 1013 RCNRRNWEG-WIITLSGWLGHLLQTPLPVDNGHVSLNGLQQYQIEMEFWF-ASHKVDVLA 1070
            +     +E  W   L+ W+  +LQ PL      +S    +  Q+EMEF+   S  +    
Sbjct: 976  KLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEPLIASQ 1035

Query: 1071 LDKLVCQYTHSGVSRVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTQ 1130
            LD L+ Q+          E + + GM KGFIDL F H+GRYY+ DYKSNWLG D SAYTQ
Sbjct: 1036 LDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQ 1095

Query: 1131 DAMEQSILEHRYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYLFLRGT--RSASQGA 1188
             AM  ++  HRYDLQY LY LALHR L+ R+ DYDYDRH GG +YLFLRG       QG 
Sbjct: 1096 QAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGVDKEHPQQGI 1155

Query: 1189 YFTRPPRDLIEGLDLLFQGKTL 1210
            Y TRP   LI+ +D +F G TL
Sbjct: 1156 YTTRPNAGLIDLMDEMFAGMTL 1177