Pairwise Alignments

Query, 701 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas fluorescens SBW25

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  432 bits (1110), Expect = e-125
 Identities = 295/662 (44%), Positives = 377/662 (56%), Gaps = 73/662 (11%)

Query: 22  QLLERWVDRGWLRALDKAFVGFLHELDPHADPLVLLAAALTSHQLGHGHVCLDL--FETL 79
           QLLE  V+   LR LD   V F   +     P V LAAAL SH  G GHVCL L   E  
Sbjct: 6   QLLEA-VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN 61

Query: 80  KA--PDFALSLPPEGDLQTGAMLLPSQLLEGLDGAHWCHALAASHLVALAVDGSESAQSR 137
           +A  P  A  +   G+LQ                 +W   L AS  V      S   +  
Sbjct: 62  EASHPLLATCVSEIGELQ-----------------NWEECLLASQAV------SRGDEPT 98

Query: 138 PLVLSGKRLYLRRYWTYERRIDTALRLRLATQERVAADLPQRLDSLFDQPPPDGVIDWQK 197
           P++L G RLYL R W  ER +           E   A L Q LD LF   P    I+WQK
Sbjct: 99  PMILCGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDEINWQK 155

Query: 198 LACALATRGAFSIVTGGPGTGKTTTVVRLLALLQAPSVESGSPLRIRLAAPTGKAAARLT 257
           +A A+A     S+++GGPGTGKTTTV +LLA L    +  G   RIRLAAPTGKAAARLT
Sbjct: 156 VAAAVALTRRISVISGGPGTGKTTTVAKLLAALI--QMADGERCRIRLAAPTGKAAARLT 213

Query: 258 ESISQQVLSLKVPDNVKEKIPTQVTTVHRLLGSRPGTRHFRHHIGNPLPLDVLVVDEASM 317
           ES+ + +  L + D  K++IP   +T+HRLLG++PG++  RHH GNPL LDVLVVDEASM
Sbjct: 214 ESLGKALRQLPLSDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASM 273

Query: 318 IDLEMMANLLDALPPHARLVLLGDKDQLASVEAGAVLGDLCRDAEAGFYSAETRRWLQAV 377
           IDL MM+ L+DALP HAR++ LGD+DQLASVEAGAVLGD+C  A AGF +AE  R L  +
Sbjct: 274 IDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF-TAERARQLSRL 332

Query: 378 SGEDLSASGLQEDLDGTHPLAQQVVMLRYSRRFGEGSGIGQLARWVNQQNAEEARKLLAA 437
           +G  + A    E       L   + +L+ S RFG  SGIGQLA  +N+ + + A K +  
Sbjct: 333 TGTHVPAGTGTE----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQ 387

Query: 438 RSHDDLFCVSLKGEHDYALERLVLDGQGDGAEGYRYYLNLLQSARPSADTPREDTAWTHW 497
           +   D+    L+   DY     +L+   +   GY  YL+LLQ AR   D           
Sbjct: 388 QDFTDIEKRLLQSGEDYI---AMLE---EALAGYGRYLDLLQ-ARAEPDL---------- 430

Query: 498 AQQLLQAFDAFQLLCAVRKGPWGVEGLNLRITAALRKVRLI--EGDEQWYEGRPVLMTRN 555
              ++QAF+ +QLLCA+R+GP+GV GLN RI   +++ R I      +WYEGRPV++ RN
Sbjct: 431 ---IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARN 487

Query: 556 DYGLGLMNGDIGIALKLPESDGGPPVLRVAFPRNDGQGGVRFVLPSRLNDVETVYAMTVH 615
           D  LGL NGDIGIAL   +        RV F   D  G ++ V PSRL + ET +AMTVH
Sbjct: 488 DSALGLFNGDIGIALDRGQG------TRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVH 539

Query: 616 KSQGSEFTHTALILPDALNPVLTKELIYTGITRAKRWFSLIEPRGGVFEEAVRRKVKRLS 675
           KSQGSEF H ALILP    PV+T+EL+YT +TRA+R  SL      +   A+  + +R S
Sbjct: 540 KSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADE-RILSAAIATRTERRS 598

Query: 676 GL 677
           GL
Sbjct: 599 GL 600