Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 577 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  650 bits (1677), Expect = 0.0
 Identities = 328/556 (58%), Positives = 418/556 (75%), Gaps = 4/556 (0%)

Query: 17  DLPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLLVTALEQRQRILIVGDF 76
           DLPPLL RLYA+RGV+S  EL++S+  ++P+Q+L GID AV++L  A  +  RI++VGDF
Sbjct: 21  DLPPLLRRLYASRGVRSARELERSVKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDF 80

Query: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGI 136
           DADGAT++ +  LG+R LG  ++ YLVPNRFE GYGL+PE+V  A  R  QL++TVDNGI
Sbjct: 81  DADGATSTALSVLGMRALGCDNISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGI 140

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196
           SS  GVA AK  G+ V+VTDHHLPGD LP A+AI+NPN   CEFPSK+LAGVGV FY+++
Sbjct: 141 SSHAGVAHAKTLGIPVIVTDHHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLML 200

Query: 197 ALRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRA 254
           ALR  LR  GW++ +    PN+ ELLDLVALG+VADVVPLDANNRIL  QGL RIRAG+ 
Sbjct: 201 ALRTFLRDKGWFDERNIAPPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKC 260

Query: 255 RPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREMAA 314
           RPGIKA+LE++ RD  ++ ++DLGF LGPRLNAAGRLDDMS+G+  LL  ++  AR +A+
Sbjct: 261 RPGIKALLEISNRDPQQLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEARVLAS 320

Query: 315 QLDGMNQDRKSIEQGMQREALAQLKDLP--VESMPYGLCLFDPEWHQGVIGILASRMKER 372
           +LD +NQ RK IEQGMQ EAL   + L    E++P GL ++ PEWHQGV+GILASR+KER
Sbjct: 321 ELDALNQTRKEIEQGMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASRIKER 380

Query: 373 YFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEE 432
           + RP IAFA AGDG LKGSGRS+ G H+RDAL  + + +P L+ K+GGHAMAAGL+L E 
Sbjct: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEH 440

Query: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492
            F  F + F   V   L    L G ++SDG L+  E  +E+A+ LR AGPWGQ FPEPLF
Sbjct: 441 KFEQFQQRFGELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLF 500

Query: 493 HGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNE 552
            G F+L++QR+VGERHLKV+++   G   LDGIAF +D   WP+  VR VELAYKLD+NE
Sbjct: 501 DGRFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREVELAYKLDINE 560

Query: 553 FRGNETVQLMIAHIEP 568
           FRGN ++Q++I  I P
Sbjct: 561 FRGNRSLQIIIDDIWP 576