Pairwise Alignments

Query, 569 a.a., single-stranded-DNA-specific exonuclease RecJ from Pseudomonas fluorescens SBW25

Subject, 577 a.a., ssDNA exonuclease, 5' --> 3'-specific (NCBI) from Escherichia coli BW25113

 Score =  647 bits (1668), Expect = 0.0
 Identities = 324/556 (58%), Positives = 423/556 (76%), Gaps = 4/556 (0%)

Query: 17  DLPPLLTRLYAARGVQSEAELDKSLARLIPYQRLKGIDAAVDLLVTALEQRQRILIVGDF 76
           +LPPLL RLYA+RGV+S  EL++S+  ++P+Q+L G++ AV++L  A  +  RI++VGDF
Sbjct: 21  ELPPLLRRLYASRGVRSAQELERSVKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDF 80

Query: 77  DADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQREPQLLITVDNGI 136
           DADGAT++ +  L +R LG +++DYLVPNRFE GYGL+PE+V  A  R  QL++TVDNGI
Sbjct: 81  DADGATSTALSVLAMRSLGCSNIDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGI 140

Query: 137 SSVEGVAAAKAAGLKVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLM 196
           SS  GV  A++ G+ V+VTDHHLPGD LPAA+AI+NPN   C FPSK+LAGVGV FY+++
Sbjct: 141 SSHAGVEHARSLGIPVIVTDHHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLML 200

Query: 197 ALRARLRSLGWYEHK--PQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRA 254
           ALR  LR  GW++ +    PN+ ELLDLVALG+VADVVPLDANNRIL  QG+ RIRAG+ 
Sbjct: 201 ALRTFLRDQGWFDERNIAIPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKC 260

Query: 255 RPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDVAAAREMAA 314
           RPGIKA+LEVA RDA ++ ++DLGF LGPRLNAAGRLDDMS+G+  LL  ++  AR +A 
Sbjct: 261 RPGIKALLEVANRDAQKLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLAN 320

Query: 315 QLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDPEWHQGVIGILASRMKER 372
           +LD +NQ RK IEQGMQ EAL   + L    +++P GL ++ PEWHQGV+GILASR+KER
Sbjct: 321 ELDALNQTRKEIEQGMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKER 380

Query: 373 YFRPTIAFADAGDGLLKGSGRSVPGFHIRDALAVVASQHPHLIAKYGGHAMAAGLTLPEE 432
           + RP IAFA AGDG LKGSGRS+ G H+RDAL  + + +P ++ K+GGHAMAAGL+L E+
Sbjct: 381 FHRPVIAFAPAGDGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEED 440

Query: 433 NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLF 492
            F LF + F   V   L    L G ++SDG L+  E  +E+A+ LR AGPWGQ FPEPLF
Sbjct: 441 KFKLFQQRFGELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLF 500

Query: 493 HGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNE 552
            G F+L++QR+VGERHLKV+++   G   LDGIAF VD  +WP+  VR V+LAYKLD+NE
Sbjct: 501 DGHFRLLQQRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINE 560

Query: 553 FRGNETVQLMIAHIEP 568
           FRGN ++Q++I +I P
Sbjct: 561 FRGNRSLQIIIDNIWP 576