Pairwise Alignments

Query, 671 a.a., excinuclease ABC subunit B from Pseudomonas fluorescens SBW25

Subject, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

 Score =  930 bits (2404), Expect = 0.0
 Identities = 468/669 (69%), Positives = 564/669 (84%), Gaps = 4/669 (0%)

Query: 4   FQLVTRFEPAGDQPEAIRQMVEGIEAGLAHQTLLGVTGSGKTFSIANVIAQINRPTLVLA 63
           F+L + F+P+GDQPEAIR++ EG+E GLAHQTLLGVTGSGKTF+IANVIA + RPT+VLA
Sbjct: 5   FKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLA 64

Query: 64  PNKTLAAQLYGEFKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTFIEKDASINDHIEQMRL 123
           PNKTLAAQLYGE K FFP NAVEYFVSYYDYYQPEAYVPSSDTFIEKDAS+N+HIEQMRL
Sbjct: 65  PNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 124 SATKALLERKDAIIVTTVSCIYGLGSPETYLKMVLHVDRGDKLDQRELLRRLTSLQYTRN 183
           SATKA+LER+D ++V +VS IYGLG P+ YLKM+LH+  G  +DQR +LRRL  LQY RN
Sbjct: 125 SATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARN 184

Query: 184 DMDFARATFRVRGDVIDIYPAESDLEAIRIELFDDEVESLSAFDPLTGEVIRKLPRFTFY 243
           D  F R TFRVRG+VIDI+PAESD  A+R+ELFD+EVE LS FDPLTG+++  +PRFT Y
Sbjct: 185 DQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIY 244

Query: 244 PKSHYVTPRETLMGAIEGIKVELAERLEYLRSNNKLVEAQRLEQRTRFDLEMILELGYCN 303
           PK+HYVTPRE ++ A+E IK ELA R + L  NNKL+E QRL QRT+FDLEM+ ELGYC+
Sbjct: 245 PKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCS 304

Query: 304 GIENYSRYLSGRESGAPPPTLYDYLPPDALLVIDESHVSVPQVGAMYKGDRSRKETLVEY 363
           GIENYSR+LSGR  G PPPTL+DYLP D LLV+DESHV++PQ+G MY+GDR+RKETLVEY
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEY 364

Query: 364 GFRLPSALDNRPMRFDEWEAISPQTIFVSATPGNYEAEHA-GRVIEQLVRPTGLVDPEIE 422
           GFRLPSALDNRP++F+E+EA++PQTI+VSATPGNYE E + G V++Q+VRPTGL+DP IE
Sbjct: 365 GFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIE 424

Query: 423 IRPALTQVDDLLSEITKRVALEERVLVTTLTKRMSEDLTDYLADHGVRVRYLHSDIDTVE 482
           +RP  TQVDDLLSEI +R A+ ERVLVTTLTKRM+EDLT+YL +HG RVRYLHSDIDTVE
Sbjct: 425 VRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 483 RVEIIRDLRLGTFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 542
           R+EIIRDLRLG FDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR
Sbjct: 485 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 543 NLNGRAILYADRITGSMERAIGETQRRRDKQIAFNLENGITPKGVFKDVADIME-GATVP 601
           N+NG+AILY D+IT SM +AIGET+RRR+KQ  +N E+GITP+G+ K V DI+  G  + 
Sbjct: 545 NVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIA 604

Query: 602 GSRSKKRKGMAKAAEESAKYENELRSPSEITKRIRQLEEKMYQLARDLEFEAAAQTRDEI 661
            +++K R G ++   E      ++ SP  + ++I +LE  M Q A++LEFE AAQ RD++
Sbjct: 605 KTKAKGR-GKSRPIVEPDNVPMDM-SPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQL 662

Query: 662 GKLRERLLA 670
            +LRE  +A
Sbjct: 663 HQLRELFIA 671