Pairwise Alignments

Query, 1073 a.a., efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

Subject, 1020 a.a., Cation/multidrug efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  323 bits (829), Expect = 3e-92
 Identities = 254/1063 (23%), Positives = 475/1063 (44%), Gaps = 64/1063 (6%)

Query: 1    MLGLVKTALQKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVVAVVWQYNGLSPDAM 60
            M GL   ++++P   IV ++ I + G +         +P +  P++ V   Y G + D +
Sbjct: 1    MAGLSTVSIRRPVLAIVFSLTILLFGIIGMTFLGVREYPSVDPPIINVRTTYVGANADVI 60

Query: 61   AGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQ 120
              ++    E S++  ++ I+ + S S  G   + + F  G D+  A   V        + 
Sbjct: 61   EAQITEPLEESING-ISGIKSLTSTSNDGTSNITVEFDVGADMEAAANDVRDKVSRAQRN 119

Query: 121  MPPGITPPLILNYSASTVPILQMAFSSPSLSEARIRDLVQNNIRLPLSALPGLAMPTPMG 180
            +PP   PP++    A + PI+ +   S   S  ++ D+  N  +  L  +PG++     G
Sbjct: 120  LPPDAEPPVVSKADADSEPIVFLNVKSEQKSLLQLSDIADNIFKERLQTIPGVSEVRIWG 179

Query: 181  GKQRQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAID 240
             K+  + L +DP  +A+ G++  DV   +  +N  +P G  +    E ++   +     D
Sbjct: 180  EKEYAMRLRMDPIRMASYGVTPLDVLTKVQSENVELPSGRIEGSTIELSVRTKSRLSTPD 239

Query: 241  ELNDLPIKTVDGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSISTLSIIDG 300
            E N+L IK  +  ++    V +       +  +++ DG   V +  +     +++ I+D 
Sbjct: 240  EFNNLIIKESENNIVRFQDVGNAELAPLNERTVLKRDGVPMVGVVLVPLPGSNSIDIVDE 299

Query: 301  IRQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRST 360
              + L  I + LP  ++  +  D++ +++ S+  V +  ++A LL  A+I LFL  WR+T
Sbjct: 300  FYRRLEFIKKDLPEDIELGIGFDSTEYIRNSISEVQETILLAFLLVVAIIFLFLRDWRTT 359

Query: 361  IIIAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKP 420
             I   +IP++++    ++     ++NV+TL G+ L++G++VDDA V +ENI   +E+G+ 
Sbjct: 360  FIPVITIPISLVGVFFIMYTMDFSINVLTLLGIVLSIGLVVDDAIVVLENIYSKIEKGEQ 419

Query: 421  VKTAILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSR 480
             + A   GA +I      + + +  VF+P+  L G  G LFR   + V  ++  S  ++ 
Sbjct: 420  PEAAAEKGAEEIFFAVIATTIALAAVFLPVIFLTGTTGRLFREFGVVVAGSVIISSFVAL 479

Query: 481  TLVPTLAMFLLKPHTPEPGAGHHPEDEFINHHEGEQHTQQRNAVLQSVLNFQQGFERHFS 540
            T+ P L+  LLK                    + E+H    N             E  F 
Sbjct: 480  TMTPMLSSKLLK--------------------KREKHNWFYNVT-----------EPGFL 508

Query: 541  NIRDTYHGLLTLALGNRKRFIVGFLACVLASFLLLPSLGQDFFPATDAGALALHVRLPLG 600
             +   Y   L   +  R    +  LA     +LL  ++  +  P  D G + +++  P G
Sbjct: 509  WLNKKYEAALVWFMQFRWVSFIIILAMGGGIYLLFNTIPSELAPTEDRGEMRINMSGPEG 568

Query: 601  TRIEESAAAFDRIEARIREIIPAEELDTIVDNIGIPLSGIDMAYSSSGTIGPQDGDIQVS 660
               E      D +   +   IP++  D+    I +   G   A ++SG I  +  D    
Sbjct: 569  ATFEYMDRVIDELLYEMMTTIPSDVWDSF---ISVTSPGFGTASTNSGFIRVRLVDASQR 625

Query: 661  LKKDHAPTADYVKKLREALPHSFPGSHFAFLPADISSQILNFGAPAPLDVKISGRSDEEN 720
                 A   D  + LR+          FA  P  I  +        P+   +  ++ E+ 
Sbjct: 626  TVSQQAVFEDVAEILRK----KTDVKAFASQPQSIGDR----RGGMPIQYVLQAQNLEKL 677

Query: 721  RAYAVELERRLQHVPGIADLRIQQSTGYPSLQVNVDRMRANGLGITERDVTNSMVASLAG 780
            +         +   P      I      P ++V +DR +A  +G++ +++  ++  S +G
Sbjct: 678  KEVIPAFMDEVTQSPIFQFSDINLKFTKPEIEVEIDREKARNIGVSVQEIARTLQLSYSG 737

Query: 781  SSQVAPTFWLNPANGVSYSIVAATPQYRLDSLPSLEALPVTGADGQSQILGGVATISRVQ 840
                   F     NG  Y +V    +   +   +L  L V   +GQ   L  +  I+   
Sbjct: 738  Q-----RFDYFIMNGKQYQVVGEMQKEDRNEPINLRMLYVRAENGQLVQLDNLVNITEKS 792

Query: 841  SPAVVTHYNIEPTLDLYANVQ-----GRDLGGVARDVQKVLDDTAALRPKGAVISLHGQI 895
            +P  +  +N   +  + A +      G  L  + R   +VLD++           + G  
Sbjct: 793  TPPQLYRFNRFVSATVSAGLAPKYTIGDGLDEMDRIAAEVLDES-------FTTDVAGVS 845

Query: 896  DALHEAFSGLSLGLLGAVVLIYLLIVVNFQSWSDPFVIITALPAALAGIVWMLFLSGTSL 955
                E+ + L    L A++LIYL++   F+S++DP  I+  +P AL G +  L+L G +L
Sbjct: 846  KEFRESSNSLIFAFLFALILIYLVLSAQFESFTDPLTIMITVPLALFGALLSLWLGGYTL 905

Query: 956  SVPALTGAILCMGVATANSILVVSFCRERLAEHGDALKAAMEAGYTRFRPVCMTALAMII 1015
            ++ +  G I+ +G+ T N IL+V F  +R A   +  +A + A   RFRP+ MT+L+ I+
Sbjct: 906  NIFSQIGIIMLIGLVTKNGILIVEFANQRKAHGLEVDEAIIGAAVARFRPILMTSLSTIL 965

Query: 1016 GMLPLAIS----EEQNAPLGRAVIGGLIFATLATLLFVPVVFS 1054
            G+LP+A++     E  +P+G AVIGGL+ +T+ TL  +P V++
Sbjct: 966  GILPIALALGAGAESRSPMGVAVIGGLVLSTILTLFVIPGVYT 1008



 Score = 74.3 bits (181), Expect = 4e-17
 Identities = 69/310 (22%), Positives = 138/310 (44%), Gaps = 10/310 (3%)

Query: 185  QITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAIDE--- 241
            +I +++D +     G+S Q++   L L           +   +Y ++     +  +E   
Sbjct: 707  EIEVEIDREKARNIGVSVQEIARTLQLSYSGQRFDYFIMNGKQYQVVGEMQKEDRNEPIN 766

Query: 242  LNDLPIKTVDGALITIGQVAHVRDGS-PPQTNIVRVDGHRAVLMPALKNGSISTLSIIDG 300
            L  L ++  +G L+ +  + ++ + S PPQ  + R +   +  + A   G     +I DG
Sbjct: 767  LRMLYVRAENGQLVQLDNLVNITEKSTPPQ--LYRFNRFVSATVSA---GLAPKYTIGDG 821

Query: 301  IRQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRST 360
            + +M     E L  S  T + G +  F ++S  S+    + A +L   ++     S+   
Sbjct: 822  LDEMDRIAAEVLDESFTTDVAGVSKEF-RESSNSLIFAFLFALILIYLVLSAQFESFTDP 880

Query: 361  IIIAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKP 420
            + I  ++PLA+  A+  L + G TLN+ +  G+ + +G++  +  + +E  N     G  
Sbjct: 881  LTIMITVPLALFGALLSLWLGGYTLNIFSQIGIIMLIGLVTKNGILIVEFANQRKAHGLE 940

Query: 421  VKTAILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSR 480
            V  AI+  A     P  ++ L   +  +P+ L  G       PM +AVI  +  S IL+ 
Sbjct: 941  VDEAIIGAAVARFRPILMTSLSTILGILPIALALGAGAESRSPMGVAVIGGLVLSTILTL 1000

Query: 481  TLVPTLAMFL 490
             ++P +  +L
Sbjct: 1001 FVIPGVYTYL 1010