Pairwise Alignments

Query, 1073 a.a., efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

Subject, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

 Score =  384 bits (986), Expect = e-110
 Identities = 288/1066 (27%), Positives = 492/1066 (46%), Gaps = 64/1066 (6%)

Query: 4    LVKTALQKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVVAVVWQYNGLSPDAMAGR 63
            L + ++  P    ++ + + ++G  +  R   D +P++ +PVV VV  Y G +P+ +   
Sbjct: 3    LTRISVNHPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVEME 62

Query: 64   VIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQMPP 123
            V    E +L+  +  ++ + S S  G  +V   F+  V    A  +V      +    P 
Sbjct: 63   VTRPVEDALNA-IGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFPE 121

Query: 124  GITPPLILNYSASTVPILQMAFSSPSLSEARIRDLVQNNIRLPLSALPGLAMPTPMGGKQ 183
                P+I  +  +  PIL +A SS SL    +  L +  +   L+ + G+   T +GG++
Sbjct: 122  DTKKPVISRFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGRK 181

Query: 184  RQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAIDELN 243
            RQI + +D   + A G+   +V  AL   N   P G+     +E TI + +  +  + L 
Sbjct: 182  RQIDVTIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEALL 241

Query: 244  DLPIKTVDGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSISTLSIIDGIRQ 303
            D+ +    G  I +  VA + +G+    N    +G  A+ +  +K    +T+ ++  +R+
Sbjct: 242  DMVVARRGGVAILLRDVATLSEGAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVRK 301

Query: 304  MLPRINETLPP-SLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRSTII 362
             L  +N  L P +++  ++ D+S+ +++SV  V    I  A L  A++ LFL SWRST+I
Sbjct: 302  RLDALNAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTVI 361

Query: 363  IAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKPVK 422
               ++P+A++  + ++   G TLN ++L  L L++GILVDDA V  ENI  HL  GK   
Sbjct: 362  TGLTLPIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITRHLHMGKSHL 421

Query: 423  TAILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSRTL 482
             A LDG  +I      +   I  VF+P+  + GI G  F    + V  A+  S  ++ TL
Sbjct: 422  RAALDGTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFTL 481

Query: 483  VPTLAMFLLKPHTPEPGAGHHPEDEFINHHEGEQHTQQRNAVLQSVLNFQQGFERHFSNI 542
             P L+     P                      Q   +R  + + +  F  GFE     +
Sbjct: 482  DPMLSSVWYDPDA--------------------QADAKRGPIGRLIARFDHGFEW----M 517

Query: 543  RDTYHGLLTLALGNRKRFIVGFLACVLASFLLLPSLGQDFFPATDAGALALHVRLPLGTR 602
               Y   +   L +R   ++      + S  ++P +G +F P  D G   +++  P+G+ 
Sbjct: 518  AGQYRHAIDWTLRHRLVTLLVTAGIFIGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSS 577

Query: 603  IEESAAAFDRIEARIREIIPAEELDTIVDNIGIPLSGIDMAYSSSGTIGPQDGDIQVSLK 662
            ++ + A   +++  +RE    E L + ++  G   +G   A    G + P     Q  L 
Sbjct: 578  LDYTTAKLQQVKKALREFPEVEMLYSTINTGG--AAGKHRAAILVGLV-PLSAREQTPLS 634

Query: 663  KDHAPTADYVKKLREALPHSFPGSHFAFLPADISSQILNFGAPAPLDVKISGRSDEENRA 722
                  A+ V+K   A+    PG     L   +       G  +P+ + I G        
Sbjct: 635  -----LAEPVRKRLSAI----PGIEINILQNGLG------GGESPVQLSILGDDRAVLEK 679

Query: 723  YAVELERRLQHVPGIADLRIQQSTGYPSLQVNVDRMRANGLGITERDVTNSMVASLAGSS 782
             A  L   ++ +PG+ ++          L V +    A+ LGI   D+  ++ A + G  
Sbjct: 680  IANGLVEDMKKIPGLVEVTSSTKDVTSILSVRLKPAAASDLGIARADLAAALSALIGGED 739

Query: 783  QVAPTFWLNPANGVSYSIVAATPQYRLDSLPSLEALPV----TGADGQSQI--LGGVATI 836
                + W + A+G SY IV   P  R      L  L +    TGA+G   +  L  VA I
Sbjct: 740  ---VSKWTD-AHGNSYDIVVRLPVERRSDAARLGELMITTGRTGANGAPLMVRLDQVADI 795

Query: 837  SRVQSPAVVTHYNIEPTLDLYANVQGRDLGGVARDVQKVLDDTAALR--PKGAVISLHGQ 894
              V +PA +  ++    + + AN+ GR LG    DV + L    A R  P G  I   G+
Sbjct: 796  GTVAAPAEIRRFDNRREILVSANITGRTLG----DVTETLQGLTASRDLPAGYRIRFGGE 851

Query: 895  IDALHEAFSGLSLGLLGAVVLIYLLIVVNFQSWSDPFVIITALPAALAGIVWMLFLSGTS 954
             + + E    +   L  A++ IY+++   F S+  P  I+ +LP +L G++  L ++G++
Sbjct: 852  AETMQETVGHMGTALSMAIIFIYIVLASQFGSFLQPLAIMVSLPLSLIGVLLGLMVAGST 911

Query: 955  LSVPALTGAILCMGVATANSILVVSFCRERLAEHGDALKAAMEAGYTRFRPVCMTALAMI 1014
            +++ +L G I+ MG+ T N IL+V F            +A   AG  RFRP+ MT LAMI
Sbjct: 912  INMFSLIGFIMLMGLVTKNGILLVDFANRERRRGLTLNEALANAGVIRFRPIIMTTLAMI 971

Query: 1015 IGMLPLAIS----EEQNAPLGRAVIGGLIFATLATLLFVPVVFSLV 1056
             GM+PL ++      Q AP+  AV+GGLI +TL TL+ VPV+ S +
Sbjct: 972  FGMIPLGLAVGGGGAQRAPMAHAVVGGLISSTLLTLIVVPVILSYI 1017