Pairwise Alignments

Query, 1597 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens SBW25

Subject, 1464 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  441 bits (1133), Expect = e-127
 Identities = 340/1140 (29%), Positives = 516/1140 (45%), Gaps = 118/1140 (10%)

Query: 422  AFSDKTATNGCPVSMVTGEELL---TLTDGALDGVLPFEWTRLYRTSAVEVDCGLGFGWS 478
            A ++ T  +  PV   TG ++L   T  D  L G+LP +W R Y +         G GWS
Sbjct: 293  AAANATMGSPNPVHAATGAKVLGGETELDFVLPGILPIDWQRFYNSRDERRTGMFGAGWS 352

Query: 479  HSLAHRLAVS-------GNSVVWTDHENRSTTLPLPSVSRPAITNSLAEAAIYLGAVPDE 531
              + + ++V        G  +++TD + R   + L  +S  +   S  E          +
Sbjct: 353  --VPYEISVEILLHPDGGEELLYTDEQGRR--INLGGISLGSAMFSPGEGLSIRRHRNGQ 408

Query: 532  LVLAQSSRFYHFRDGA--------LTAISDAYDNRLRIARDFLGRIERLDNGVGRSLFLR 583
            L++  +   Y   +          LT + D  D+R+ +  D  GR+ +L +       L 
Sbjct: 409  LLIESADGIYRLFESTPANVSLLRLTQLGDRNDHRIHLNYDAAGRLVQLHDN------LD 462

Query: 584  YASGRIVAVDYQIQRIVDEGPYVWVTEQTVVSYAYDGAGRLVSATNAVGESEV-YRYDEQ 642
                 ++     + +I  E  Y     + +VSY+Y+  G L    +A G+ +  + YD  
Sbjct: 463  LVQVELIRDQGHVSKI--ERVYPDQRREVLVSYSYNATGDLTEVRDATGQIQRRFSYDAG 520

Query: 643  HVILERGLAGGASFYWEWEQAGKAA-RCVRHWAS---------------------FSQMD 680
              ++E  L  G   ++EW        R   HW                         ++ 
Sbjct: 521  RRMVEHQLPAGLRCFYEWALVEDVEWRVSHHWTDEGDAYHFEYDLSAGVTRITDGMQRIS 580

Query: 681  TRYAWDDNGQVTVFNAD-GSQEIYVHDQRARLVQRVDPDGAEHFKSYDEKGRLTVEQDPL 739
             R+ W++  Q+T ++ + G   ++  +   +L+   DP G     SYDE G L  E DPL
Sbjct: 581  IRH-WNNQHQITKYSDNLGQTWLFDWNDERQLLGATDPQGGRFEYSYDETGNLISEIDPL 639

Query: 740  GAVKAYQYDDAARLVALFPGEDEPTTYEHDNGFVRVVRRGEAVWKYERNDQGDVIRRTDP 799
            G   +  + +   L  +   E  P  +                W Y+ + +G+ I  TDP
Sbjct: 640  GRRDSTMWLEHWALPLV---ETNPANHS---------------WHYQYDQRGNCIAATDP 681

Query: 800  DGNATDYSYNKYGQLVGVWYPDHSCQTLVWNERGQLLEEQCPNGGIKRYRYDDLGRKISQ 859
             G+ T Y Y+ +G  V +       + L W+  GQL+E    +G   R+ YD+ G     
Sbjct: 682  MGHITRYRYDSHGHPVEIIDATGKSKKLRWSPFGQLVEHIDCSGYSTRFGYDERGFLQFI 741

Query: 860  EDEHGALTQFEWNDVGRLVQIVLPSGDTRKYTYNPYGKITSERDELGNITRYEYADGLHL 919
             D  G  TQF  +  GRL+   LP G T +YT +  G +    D  G+ T Y++ +    
Sbjct: 742  TDALGERTQFSHDARGRLISSQLPDGRTEQYTRDTSGLLLGYTDPAGHTTLYQH-NRRGQ 800

Query: 920  ISRRLNADGSQVNYRYDNVRLLLTEIENEVGETYRLQYHSNGLIQQETGFDGQRTAYVYD 979
            + +R +A G +V + YD+   L   I NE  E+Y+  + +   + ++   DG    Y YD
Sbjct: 801  VCQRTDAYGRRVKFAYDSYGRLKALI-NENEESYQFVWDAGDRLTEQRDLDGSAKRYTYD 859

Query: 980  LNGNLQEKTE---HGDDG--------SQLVTRYERDHAGRLVRKTLPDGNSVNYAYDRQG 1028
            L  ++   T    H D+         S +V R ERD  GRL+ K   DG +  Y YD   
Sbjct: 860  LLNHMTAMTAVPAHFDNTLVNAAETPSPIVHRMERDAVGRLIAKMTDDGRT-EYVYDSLD 918

Query: 1029 NLLSV-----DDGNWFLAYEYDVQNRLTAEHQGWGTLRYGYDACGQLTNLRLPDNNRLTF 1083
             L +V           L++ Y    RL  E    GTL++ YD  G LT  +LPD   L  
Sbjct: 919  QLCAVTFTDLSGDTQVLSFAYAPLGRLLTEQSPMGTLQHHYDELGNLTQTQLPDGRWLNR 978

Query: 1084 NHDKGGHLSTVELNGAVLTSHQFNA-DREQQRTQGKLLSTYQHDHQGRLFNQSIGDAEGP 1142
             +   GHL  + L+G V++  + +   RE  RTQG+L +  ++D  GRL ++    +  P
Sbjct: 979  LYYGSGHLHQINLDGEVISDFERDRLHREVLRTQGQLSTRSEYDRSGRLRSRHCRHSHQP 1038

Query: 1143 VY-----RRHYDYDKSGNLTRLLD---TRKGEHHYHYDPLSRLTRA-DHSQGEQERFGHD 1193
            +      ++H++YD + NLT  LD   T +     HYD   R+T + D+  G++E F +D
Sbjct: 1039 MLTPAAMQQHFEYDPADNLTGKLDQQPTTQQRQLLHYDATGRITASQDNLLGQRETFTYD 1098

Query: 1194 PAGNLLMQNRPGPDIVAGNRLMIQGDHQYDYDAFGNLIRERRGKGHRLVTEYRYDCQHRL 1253
             A NLL    PG  +V  N+LM   D +Y YD FG +I +R     R V  + YD + RL
Sbjct: 1099 AAANLLDSPHPGAGLVVHNKLMTYQDKRYRYDGFGRMIEKRSTS--RGVQRFAYDAESRL 1156

Query: 1254 IGTKKPNGQTASYRYDPFGRRISKTVGDVT------TEFFWKGDTLIAEHHAERHRSYLY 1307
            I  +  NG      YDP GRRI KT   +       T F W G  L+ EH   +   Y+Y
Sbjct: 1157 IEVRNENGNVVKMHYDPLGRRIKKTEHGIDGYPLSETRFSWDGLRLLQEHKYSQTSLYVY 1216

Query: 1308 EPDSFRPLALLEGFGPKETKAYHYQLDHLGTPQELTAADGEIVWSAHYRAYG---EITRL 1364
            E + + PLA ++G G  + K  +Y  D  G P +L+ ADG IVW A YR +G   E  R 
Sbjct: 1217 ENEGYEPLARVDGIGQLQ-KLRYYHNDLNGLPAQLSEADGHIVWQATYRVWGNTLEEVRE 1275

Query: 1365 DIGKIDNPLRFQGQYFDQESGLHYNRHRYYHPDIGRYLTPDPVKLTGGINAYQYVPNPTG 1424
                 +  LRFQGQY D+E+GLHYN  R+Y PDIGR+ +PDP+ L GG+N Y Y  NP  
Sbjct: 1276 PHYIEEQNLRFQGQYLDRETGLHYNTFRFYDPDIGRFTSPDPISLMGGLNLYLYGFNPFS 1335

Query: 1425 WVDPLGLSSC---PGRDGCKPK-TEAALTTETTSVDKGEPRPPKGASTEYLYRGDHKNPD 1480
            WVDPLGL      PG     PK    A  T  ++ D  E + P  +    + +G  K  D
Sbjct: 1336 WVDPLGLEGIELGPGEQLGNPKDINFAQRTINSAFDTPEGKKPIQSVVNQVKKGKLKVTD 1395