Pairwise Alignments
Query, 1597 a.a., type IV secretion protein Rhs from Pseudomonas fluorescens SBW25
Subject, 1572 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417
Score = 2356 bits (6105), Expect = 0.0
Identities = 1142/1527 (74%), Positives = 1280/1527 (83%), Gaps = 9/1527 (0%)
Query: 9 IGFLVLAALDSKTRDVDSVISDFKRCLNHYDAWAESFFSFSALDIEQVFKVGHDVALVAP 68
I VL +D++T DV++V DF+ CLN +D WAESF+S SAL++EQVF+VG DVALVAP
Sbjct: 5 IAQFVLYPMDAETPDVETVFRDFRSCLNSFDEWAESFWSGSALNVEQVFRVGEDVALVAP 64
Query: 69 INHSLFPSTTTATCQANGTLTLVHMFQSARFVPIGNTPVMLQRIDPKGGPLGDPLHKTIG 128
+ S P+ T A C+A G+LTLVHMF+S RFVPIGNTPVMLQ I G P G P+ +TI
Sbjct: 65 AS-SKKPNRTVAVCKAQGSLTLVHMFESTRFVPIGNTPVMLQAIGSDGKPFGAPIRRTID 123
Query: 129 PSGILEITECDRNQQYRVSFYPNVSTAHFKALYASYQSVIEPLEGWLRGEWGTTFEPLWK 188
SGILE+ EC R+Q+Y+V+FYPNVS AH KALYASYQSVI LE LR EW TF+P WK
Sbjct: 124 ASGILEVNECIRDQRYQVTFYPNVSKAHVKALYASYQSVIAGLEHRLRDEWTKTFKPRWK 183
Query: 189 GYSEANVLKRYLSLHQGYARGFGEALYSLWDNIQQMLQWFLDPLGHAEKLLHYLSQDEFE 248
++ A +R +A G G+ALY+LWDN+ Q+ D ++EKLL Y++Q E +
Sbjct: 184 DFASATPFERSAMQGVAFAGGIGKALYNLWDNVTQLYDLLADLKANSEKLLQYITQAELD 243
Query: 249 KLLKLGTESLAKGLMVLSDEPLLFVYLSAMVSWMRMLPPPYMNELLGEISAEVLINVVLC 308
+LLKLG +++A GL+VLSDEPLLF+YLSAMV+W+RML PP M EL GEI+ EVLIN+ L
Sbjct: 244 ELLKLGKDAIAHGLLVLSDEPLLFIYLSAMVAWIRMLAPPEMYELAGEITGEVLINLFLI 303
Query: 309 LATAGMGMAVRIGTKVLGSIKSQRARRWLEHMAGQFGKFRADDHTQVAKPILLSSQATTI 368
AT GMG+ VR+G +VLG IKS R RRWLE +A Q R D H + AKP+LL S AT I
Sbjct: 304 WATRGMGVHVRLGMQVLGPIKSGRVRRWLERLADQLVGPRLDAHVEAAKPLLLGSAATPI 363
Query: 369 KTIPDVPLKAGDQVVANPVPVVRDKAKQRTVLVRQEPVDDVPASARNPNGDAAAFSDKTA 428
+ IPDVPLKAGDQV+ANPVPVVRDKA QRTVLVRQE VDDVPASARNP G+ AA SDKTA
Sbjct: 364 RVIPDVPLKAGDQVIANPVPVVRDKATQRTVLVRQETVDDVPASARNPAGNVAASSDKTA 423
Query: 429 TNGCPVSMVTGEELLTLTDGALDGVLPFEWTRLYRTSAVEVDCGLGFGWSHSLAHRLAVS 488
TNGCPVSMVTGEELLTLTDG LDG+LPFEW+RLYRTSAVE DCGLGFGWSHSLAHRL+VS
Sbjct: 424 TNGCPVSMVTGEELLTLTDGTLDGLLPFEWSRLYRTSAVETDCGLGFGWSHSLAHRLSVS 483
Query: 489 GNSVVWTDHENRSTTLPLPSVSRPAITNSLAEAAIYLGAVPDELVLAQSSRFYHFRDGAL 548
G++VVWTDHENRSTTLPLP+ SRPAITNSLAEAAIYLGAVPDELVL+Q SRFYHFRDGAL
Sbjct: 484 GDAVVWTDHENRSTTLPLPTASRPAITNSLAEAAIYLGAVPDELVLSQGSRFYHFRDGAL 543
Query: 549 TAISDAYDNRLRIARDFLGRIERLDNGVGRSLFLRYASGRIVAVDYQIQRIVDEGPYVWV 608
TAISDAYDNRLRI RDFLGRIERLDNGVGRSLFLRYAS RIVAVDYQI+R VD+GP+VWV
Sbjct: 544 TAISDAYDNRLRICRDFLGRIERLDNGVGRSLFLRYASSRIVAVDYQIERAVDDGPFVWV 603
Query: 609 TEQTVVSYAYDGAGRLVSATNAVGESEVYRYDEQHVILERGLAGGASFYWEWEQAGKAAR 668
TEQTVV+YAYD +GRL+SATNAVGESEVYRYD+QHVILERGLAGGASF+W WE+AGKAAR
Sbjct: 604 TEQTVVAYAYDDSGRLISATNAVGESEVYRYDDQHVILERGLAGGASFFWAWERAGKAAR 663
Query: 669 CVRHWASFSQMDTRYAWDDNGQVTVFNADGSQEIYVHDQRARLVQRVDPDGAEHFKSYDE 728
CVRHWASFSQMDTRYAWDDNGQVTVFNA GSQE+YVHD RARL QRVDPDGA+HFKSYD+
Sbjct: 664 CVRHWASFSQMDTRYAWDDNGQVTVFNAAGSQEVYVHDLRARLGQRVDPDGAQHFKSYDD 723
Query: 729 KGRLTVEQDPLGAVKAYQYDDAARLVALFPGEDEPTTYEHDNGFVRVVRRGEAVWKYERN 788
GRLTVEQ PLGA+ AY YD+A RLVALFPG+D PTTYEHDNGFVRVVRRG+AVWKYERN
Sbjct: 724 PGRLTVEQAPLGAITAYPYDEAGRLVALFPGDDAPTTYEHDNGFVRVVRRGQAVWKYERN 783
Query: 789 DQGDVIRRTDPDGNATDYSYNKYGQLVGVWYPDHSCQTLVWNERGQLLEEQCPNGGIKRY 848
+QGDV R+TDPDGNATDYSYNKYGQLVGVWYPDHSC L WNERGQLLEEQ PNG IKRY
Sbjct: 784 NQGDVTRKTDPDGNATDYSYNKYGQLVGVWYPDHSCHRLTWNERGQLLEEQLPNGVIKRY 843
Query: 849 RYDDLGRKISQEDEHGALTQFEWNDVGRLVQIVLPSGDTRKYTYNPYGKITSERDELGNI 908
YDDLGR++++ED GALTQ++W+ VGRL+++VLP G TR+Y+YN YGKITSER+ELG++
Sbjct: 844 CYDDLGRQVAREDAQGALTQYQWDSVGRLIRVVLPGGATREYSYNAYGKITSERNELGHV 903
Query: 909 TRYEYADGLHLISRRLNADGSQVNYRYDNVRLLLTEIENEVGETYRLQYHSNGLIQQETG 968
TRYEYADGLHLISRR+NADG+QV YRYDNVRLLLTEIENEVGETYRLQYHSNGL QQE G
Sbjct: 904 TRYEYADGLHLISRRINADGTQVKYRYDNVRLLLTEIENEVGETYRLQYHSNGLTQQEIG 963
Query: 969 FDGQRTAYVYDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTLPDGNSVNYAYDRQG 1028
FDGQR+AY YDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTLPDG+ V+YAYDRQG
Sbjct: 964 FDGQRSAYAYDLNGNLQEKTEHGDDGSQLVTRYERDHAGRLVRKTLPDGSLVDYAYDRQG 1023
Query: 1029 NLLSVDDGNWFLAYEYDVQNRLTAEHQGWGTLRYGYDACGQLTNLRLPDNNRLTFNHDKG 1088
NLLSV++G+W LAYEYD QNRLTAEHQGWGTLRYGYDAC L LRLPDNNR+TFNH KG
Sbjct: 1024 NLLSVENGHWALAYEYDSQNRLTAEHQGWGTLRYGYDACDNLQTLRLPDNNRVTFNHAKG 1083
Query: 1089 GHLSTVELNGAVLTSHQFNADREQQRTQGKLLSTYQHDHQGRLFNQSIGDAEGPVYRRHY 1148
G L VE+NG LT+H F+ RE QR QGKLLS+YQ+D QGRLFN + + EG +Y+R Y
Sbjct: 1084 GLLEKVEVNGQTLTAHLFDTGREHQRGQGKLLSSYQYDAQGRLFNHGLCNVEGAIYQRQY 1143
Query: 1149 DYDKSGNLTRLLDTRKGEHHYHYDPLSRLTRADHSQGEQERFGHDPAGNLLMQNRPGPDI 1208
YD GNLTR LDTRKGEHHYHYD LSRL RADHSQGEQERF HDPAGNLLMQNRPGPDI
Sbjct: 1144 HYDTCGNLTRRLDTRKGEHHYHYDALSRLIRADHSQGEQERFAHDPAGNLLMQNRPGPDI 1203
Query: 1209 VAGNRLMIQGDHQYDYDAFGNLIRERRGKGHRLVTEYRYDCQHRLIGTKKPNGQTASYRY 1268
VAGNRLMIQGDH YDYDAFGNLIRERRGKGH LVTEYRYDCQHRLIG KKPNGQTASYRY
Sbjct: 1204 VAGNRLMIQGDHHYDYDAFGNLIRERRGKGHTLVTEYRYDCQHRLIGIKKPNGQTASYRY 1263
Query: 1269 DPFGRRISKTVGDVTTEFFWKGDTLIAEHHAERHRSYLYEPDSFRPLALLEGFGPKETKA 1328
DPFGRRISKTV +TTEFFW+GDTLIAEHHA RHRSYLYEPD+FRPLALLEGFGPKETKA
Sbjct: 1264 DPFGRRISKTVDGITTEFFWQGDTLIAEHHANRHRSYLYEPDTFRPLALLEGFGPKETKA 1323
Query: 1329 YHYQLDHLGTPQELTAADGEIVWSAHYRAYGEITRLDIGKIDNPLRFQGQYFDQESGLHY 1388
YHYQLDHLGTPQELT DGEIVWSAHYRAYGEITR+DIGK+DNPLRFQGQYFDQESGLHY
Sbjct: 1324 YHYQLDHLGTPQELTNPDGEIVWSAHYRAYGEITRVDIGKVDNPLRFQGQYFDQESGLHY 1383
Query: 1389 NRHRYYHPDIGRYLTPDPVKLTGGINAYQYVPNPTGWVDPLGLSSCPGRDGCKPKTEAAL 1448
NRHRYY+PDIGRYLTPDPVKL GGIN YQYVPNPTGW+DPLGLS+CP CK +
Sbjct: 1384 NRHRYYNPDIGRYLTPDPVKLAGGINTYQYVPNPTGWIDPLGLSNCPEGGRCKSQARTEE 1443
Query: 1449 TTETTSVDKGEPRPPKGASTEYLYRGDHKNPDHVFQHGFKSKGNSNDLYL----HALDSN 1504
+ V + EP P + + + K +H +HG + + S+ YL H +
Sbjct: 1444 PIDKIRVTRAEPNSPAVSKRPTEFASEQKLNEHYDKHGTEFRVESSHEYLLAARHVVSKG 1503
Query: 1505 NPPSNFISTSPSKITAIDFATRYGTRK 1531
P +P+ I + GT +
Sbjct: 1504 TPVQYVYRGTPT----ISYVLLMGTNR 1526